A practical approach to phylogenomics: the phylogeny of ray-finned fish (Actinopterygii) as a case study

Table 2 Summary information of the 10 gene markers amplified in 14 taxa

Gene	Exon ID	No. of bp	No. of var.	No. of PI	Genetic distance (%)	Sub. rate	CI-MP	α	RCV	Treeness
zic1	ENSDARE00000015655	894	296	210	13(2.3–22.6)	0.64	0.61	1.64	0.13	0.23
myh6	ENSDARE00000025410	735	323	235	18(7.8–23.2)	1.35	0.54	0.68	0.11	0.22
RYR3	ENSDARE00000465292	825	389	258	18(8–23.6)	1.25	0.56	0.67	0.11	0.21
Ptr	ENSDARE00000145053	705	304	234	18(5.3–28.1)	1.03	0.57	1.64	0.12	0.29
tbr1	ENSDARE00000055502	666	256	170	14(3–25.6)	0.65	0.67	2.91	0.10	0.28
ENC1	ENSDARE00000367269	810	312	248	16(6.7–24.3)	1.13	0.55	1.10	0.16	0.33
Gylt	ENSDARE00000039808	870	463	335	21(6.6–29.7)	1.18	0.60	1.70	0.12	0.27
SH3PX3	ENSDARE00000117872	705	290	226	16(6.2–24)	1.11	0.55	1.53	0.14	0.22
plagl2	ENSDARE00000136964	675	250	184	14.3(5.1–21.5)	0.81	0.61	0.92	0.10	0.33
sreb2	ENSDARE00000029022	987	344	225	13(4–21.6)	0.85	0.61	0.88	0.11	0.23
RAG1	-	1344	684	514	20(8.1–29)	1.28	0.57	1.68	0.05	0.23

bp, base pairs; var., variable sites; PI, parsimony informative sites; Genetic distance, average uncorrected distance, number in parenthesis are range of the distances; Sub. rate, relative substitution rate estimated using Bayesian approach; CI-MP, consistency index; α, gamma distribution shape parameter; RCV, relative composition variability.

ISSN: 2730-7182