From: Radiation of the Tnt1 retrotransposon superfamily in three Solanaceae genera
code | Domest. | total | unique | size bp | π JC | I | II | III | premature | no stop/cod | |
---|---|---|---|---|---|---|---|---|---|---|---|
bre | wild | 25 | 13 | 52% | 456(± 7) | 0,057 | 13 | - | - | 1 | 5 |
cmm |  | 3 | 3 | 100% | 423(± 5) | 0,093 | 1 | 2 | - | - | - |
chc | Â | 1 | 1 | 100% | 428 | - | 1 | - | - | - | - |
tar |  | 15 | 9 | 60% | 422(± 14) | 0,038 | 1 | 8 | - | 1 | - |
mga |  | 17 | 10 | 58% | 439(± 19) | 0,171 | 6 | 3 | 1 | - | - |
sat |  | 7 | 6 | 85% | 440(± 4) | 0,069 | 4 | 2 | - | - | - |
inf |  | 23 | 10 | 43% | 428(± 9) | 0,053 | 4 | 6 | - | 2 | - |
dds | Â | 1 | 1 | 100% | 435 | - | 1 | - | - | 1 | - |
lph | Â | 1 | 1 | 100% | 436 | - | 1 | - | - | - | - |
mcd |  | 2 | 2 | 100% | 428(± 11) | 0,078 | 1 | 1 | - | - | - |
opl |  | 2 | 2 | 100% | 419(± 2) | - | - | 2 | - | 1 | - |
scr |  | 12 | 12 | 100% | 463(± 11) | 0,132 | 6 | 5 | 1 | 1 | 1 |
gou |  | 3 | 3 | 100% | 430(± 8) | 0,093 | 2 | 1 | - | 1 | - |
ha |  | 19 | 12 | 63% | 428(± 9) | 0,249 | 2 | 7 | 3 | - | - |
inc |  | 21 | 11 | 52% | 421(± 4) | 0,041 | 2 | 9 | - | 3 | - |
ktz |  | 18 | 14 | 77% | 443(± 8) | 0,287 | 7 | - | 7 | - | - |
oka |  | 16 | 7 | 43% | 434(± 10) | 0,273 | 2 | 3 | 2 | - | - |
spg |  | 20 | 9 | 45% | 433(± 7) | 0,055 | 5 | 4 | - | 3 | - |
vrn |  | 12 | 4 | 27% | 429(± 9) | 0,072 | 2 | 2 | - | - | - |
Ke | cult. | 8 | 8 | 100% | 426(± 14) | 0,078 | 2 | 6 | - | - | - |
Hu | Â | 4 | 4 | 100% | 421 | 0,026 | - | 4 | - | - | - |
Cha |  | 23 | 17 | 74% | 424(± 7) | 0,064 | 7 | 10 | - | - | - |
Mo |  | 29 | 17 | 58% | 423(± 6) | 0,057 | 6 | 11 | - | - | - |
Tu |  | 17 | 14 | 82% | 428(± 10) | 0,058 | 8 | 6 | - | - | - |
acl | wild | 18 | 7 | 38% | 419(± 19) | 0,191 | 3 | 3 | 1 | - | 4 |
total | Â | 317 | 197 | 62% | Â | Â | 87 | 95 | 15 | 14 | 10 |