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Table 2 Assignment of P450 genes and families into clans.

From: The evolutionary history of Cytochrome P450 genes in four filamentous Ascomycetes

clana

familiesb

Tc

B.Vd

Ie

UIf

UIPg

51

51(8)

8

100

12

0

0

52

52(2) 538(2)** 539(8) 584(6) 585(2) 655(1)

21

89

50

30

0.6

53

53(6)

6

100

18

14

0.78

54

54(3) 503(1) 560(1) 599(2) 602(2) 604(1) 649(1)

11

97

41

9

0.22

55

55(2)

2

100

11

3

0.27

56

56(1) 661(1)

2

87

6

2

0.33

58

58(3) 542(2) 551(2) 552(10) 681(1) 682(5)**

23

76

78

23

0.29

59

59(3)** 586(1) 587(2)~ 662(1)

7

98

21

10

0.48

60

60(2)

2

92

6

4

0.67

61

61(5)

5

100

16

1

0.06

62

62(3)

3

100

12

8

0.67

68

68(13)** 595(1) 596(1) 622(1) 650(2) 651(1) 652(1)

20

99

74

16

0.22

504

504(6)

6

100

18

8

0.44

505

505(8)^ 541(2)

10

100

27

5

0.19

507

507(1) 527(4) 535(4) 570(5)~

14

100

44

6

0.14

526

526(5) 591(1) 644(1)

7

97

17

10

0.59

528

528(3)

3

100

15

7

0.47

529

529(2) 543(2) 545(1)

5

100

13

0

0

530

530(3)

3

44

6

3

0.5

531

531(5) anCYP532E1** 631(2)

8

100

38

12

0.32

532

532(10/11)** 536(2) 629(1) 674(1) 675(1) 676(1)

16

95

60

31

0.52

533

533(2) 620(5) 621(1)

8

100

28

10

0.36

534

534(3)

3

100

13

6

0.46

537

537(4) 577(2)

6

100

28

14

0.5

540

540(9)

9

100

15

5

0.33

544

544(3)

3

100

5

3

0.6

546

546(3)

3

100

7

7

1

547

547(3)^ 581(1) 582(1) 616(1) 617(4) 618(1)

11

74

31

18

0.58

548

548(6)

6

100

18

4

0.22

550

550(3) 553(1) 633(2) 634(1) 635(1) 636(1) 660(1)

10

96

17

6

0.35

559

559(2) 606(2) 623(3) 647(1)

8

100

12

2

0.17

561

561(6)

6

100

11

0

0

563

563(2) 565(2)

4

78

15

10

0.67

566

566(3)

3

100

13

3

0.23

567

567(5)

5

93

26

14

0.54

572

572(1) 573(3)

4

100

12

6

0.5

574

574(1) 628(1) 669(1) 670(2) 671(2)**

7

70

32

6

0.19

578

578(3)~

3

85

6

6

1

593

593(2)

2

100

11

9

0.82

603

603(2)

2

100

8

4

0.5

605

605(2)

2

100

5

1

0.2

613

613(1) 686(1)

2

86

7

3

0.43

619

619(3) 665(1)

4

75

22

5

0.23

630

630(3)

3

100

5

5

1

643

643(3)

3

100

9

7

0.78

653

653(1) 654(1)

2

91

10

6

0.6

65-1

ncuCYP65B1 mgCYP65B2 ncuCYP65C1 **

3

96

16

10

0.63

65-2

fgCYP65A2 fgCYP65Q1 **

2

85

8

0

0

65-3

fgCYP65R1 mgCYP65K1 mgCYP65L1 **

3

78

8

6

0.75

65-4

mgCYP65J1 mgCYP65M1 **

2

77

5

5

1

65-5

mgCYP65F1 **

1

    

65-6

mgCYP65G1 **

1

    

65-7

fgCYP65S1 **

1

    

65-8

anCYP65T1 **

1

    

65-9

mgCYP65D1 **

1

    

65-10

mgCYP65H1 **

1

    

65-11

mgCYP65E1 **

1

    

65-12

mgCYP65P1 **

1

    

65-13

anCYP65U1 **

1

    

65-14

mgCYP65un1 **

1

    
  1. a. Orphan clans (clans containing a single gene) are not listed. There are 21 orphan clans associated with character state pattern 12 (Figure 2), clan 646, 648, 656–659, 663, 664, 666–668, 672,673, 677–680, 683–685, 687; 15 orphan clans associated with pattern 13 (Figure 2), clan 506, 614, 615, 624–627, 632, 637–642, 645; 18 orphan clans associated with pattern 14 (Figure 2), clan 562, 564, 568, 575, 576, 583, 589,590,592, 597, 598, 601, 607, 608–612 and 1 clan associated with pattern 15, clan 549.
  2. b. Parentheses indicate the number of genes within each family.
  3. c. "T" indicates total number of genes in a clan.
  4. d. "B.V" indicates bootstrap support for a clan.
  5. e. "I" indicates total number of introns in a clan.
  6. f. "UI" indicates the number of unique introns in a clan.
  7. g. "UIP" indicates unique intron percentage. UIP = UI/I.
  8. ** Families and genes that were not monophyletic on NJ tree nor MP tree.
  9. ^ Families only monophyletic on MP tree.
  10. ~ Families only monophyletic on NJ tree.