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Table 1 Homologs of predicted products of ORFs in the LPS locus of Xoo strain BXO8

From: The role of horizontal transfer in the evolution of a highly variable lipopolysaccharide biosynthesis locus in xanthomonads that infect rice, citrus and crucifers

ORF (product size [aa]) Putative function Homologous protein (size [aa]) Organism Accession no. I/S (E value)a
ORF1 (260) ABC-2 type transporter ABC transporter permease (260) Xac strain 306 AAM38444 70/84 (2e-85)
ORF2 (410) ATP binding ATP binding protein (409) Xac strain 306 AAM38443 74/84 (4e-172)
ORF3 (386) Unknown Hypothetical protein (563) Xac strain 306 AE008923 51/65 (5e-92)
ORF4 (611) O-antigen biosynthesis O-antigen biosynthesis protein (614) Xac strain 306 AAM38441 66/79 (0)
ORF5 (417) glycosyl transferase Hypothetical protein (419) Xac strain 306 AE008923 61/73 (5e-141)
ORF6 (311) Transposase IS1404 (349) Xoo KACC10331 YP_202804 97/98 (4e-145)
ORF7 (158) Transposase IS1478 (158) Xoo KACC10331 YP_201135 89/92 (1e-76)
ORF8 (521) unknown Hypothetical protein (581) Xac strain 306 AAM38439 44/61 (3e-102)
ORF9 (136) glycosyltransferase Hypothetical protein (132) Xac strain 306 AAM38438 50/70 (2e-33)
ORF10 (452) Unknown Hypothetical protein (746) Xac strain 306 AAM38435 32/50 (7e-13)
ORF11 (430) protoporphyrinogen oxidase phytoene desaturase (428) Xac strain 306 AAM38437 78/88 (0)
ORF12 (312) epimerase NAD dependent epimerase (314) Xac strain 306 AAM38436 81/89 (4e-148)
ORF13 (223) methyltransferase Methyltransferase type 11 (229) Nocardioides sp. JS614 ABL82494 48/64 (7e-52)
ORF14 (242) dehydrogenase Short chain dehydrogenase (242) Xac strain 306 AAM38434 90/95 (3e-109)
ORF15 (433) oxidoreductase Putative oxidoreductase (433) Xac strain 306 AAM38433 93/94 (0)
ORF16 (481) prenyltransferase Integral membrane protein (481) Xac strain 306 AAM38432 95/97 (0)
ORF17 (328) unknown function Integral membrane protein (292) Xac strain 306 AAM38431 90/93 (4e-126)
  1. aI and S indicate identity and similarity, respectively. E values were obtained by using the BLASTX algorithm and screening the NCBI database.