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Table 1 Differences observed for the five hemiascomycetous yeasts.

From: Yarrowia lipolytica vesicle-mediated protein transport pathways

  S. cerevisiae Y. lipolytica C. glabrata K. lactis D. hansenii
COPII Sec24p, Sfb2,3p (Sec24p-related) 2 proteins 3 proteins 2 proteins 2 proteins
  Sec13p 1 protein 2 proteins 1 protein 1 protein
  Sed4p no hits 1 protein no hits no hits
Adaptor Aps1,2,3p 2 proteins 3 proteins 3 proteins 3 proteins
  Gga1,2p 1 protein (Gga2p) 1 protein (Gga2p) 1 protein (Gga2p) 1 protein (Gga2p)
Sorting Nexin Snx41,42p 1 protein 2 proteins 2 proteins 2 proteins
Yptp Ypt7p 1 protein 1 protein 1 protein 2 proteins
  Ypt10p no hits 1 protein no hits no hits
  Ypt11p no hits 1 protein 1 protein no hits
  Ypt31-32p 2 proteins 2 proteins 1 protein (Ypt31p) 1 protein (Ypt32p)
  Ypt51,52,53p 3 proteins 2 proteins 3 proteins 3 proteins
  no hits Rab2,4p-related no hits no hits no hits
Yptp regulation Yos1p no hits no hits no hits 1 protein
  Gyp4p no hits no hits no hits no hits
  Gyl1p no hits 1 protein no hits no hits
COG complex Cog1p no hits 1 protein 1 protein no hits
  Cog2p 1 protein 1 protein 1 protein 1 protein
  Cog7p no hits 1 protein 1 protein 1 protein
Arfp Arf1,2,3p 2 proteins(Arf1,3p) 2 proteins(Arf1,2p) 2 proteins (Arf2,3p) 3 proteins
  Arl1p 2 proteins 1 protein 1 protein 1 protein
Arl3p localization NatC complex (3 proteins) 2 proteins 3 proteins 3 proteins 3 proteins
GARP complex Vps51p no hits 1 protein 1 protein no hits
SNARE-Qa Vam3p Pep12p-like 1 protein 1 protein Pep12p-like
  Sso1,2p 3 proteins 2 proteins 1 protein (Sso2p) 1 protein (Sso2p)
SNARE-Qb,Qc Spo20p no hits no hits no hits no hits
SNARE-Qc Sft1p 1 protein no hits 1 protein 1 protein
  Syn8p 1 protein no hits no hits 1 protein
SNARE-R Nyv1p 1 protein 1 protein 1 protein no hits
  Snc1,2p 2 proteins 2 proteins 1 protein (Snc2p) 1 protein (Snc2p)
Exocytosis SNARE regulation proteins Tpd3p (CAPP regulatory subunit) 1 protein 2 proteins 1 protein 1 protein
  Tpk1,2,3p (PKA) 1 protein 2 proteins 2 proteins 1 protein
SNARE recycling Sec18p 1 protein 2 proteins 1 protein 1 protein
  1. See Additional file 2 for the list of proteins potentially implicated in vesicular transport.