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Table 1 Estimation of positively selected branches and sites using branch-site models.

From: Extensive lineage-specific gene duplication and evolution of the spiggin multi-gene family in stickleback

Foreground branches

2ΔL

Parameter estimates in the modified model

Positively selected sites

Whole spiggin multi-gene family

4.578

P0 = 0.53341, P1 = 0.40016, P2a = 0.03795, P2b = 0.02847, ω0 = 0.14243, ω2 = 893.45416.

 

Lineage A

7.544*

P0 = 0.55829, P1 = 0.42899, P2a = 0.00720, P2b = 0.00553, ω0 = 0.14530,ω2 = 588.82297

130, 202, 247

Lineage B

9.859**

P0 = 0.47669, P1 = 0.35041, P2a = 0.09965, P2b = 0.07325, ω0 = 0.14136,ω2 = 9.76851

2, 3, 4, 8, 10, 16, 37, 39, 66, 67, 71, 79, 81, 88, 109, 111, 122, 128, 132, 139, 140§, 157, 174, 184, 186, 188, 191, 198, 200, 212, 214, 215, 221, 227, 228, 229, 251, 260, 296

  1. *, p < 0.05; **, p < 0.01.
  2. §Posterior probability > 0.99