Table 4 Comparison of the covarion model and MBL models with different number of components for three real datasets
From: Evaluation of the models handling heterotachy in phylogenetic inference
| Â | -LnL | AIC | BIC | CV |
|---|---|---|---|---|
| Â | Animal dataset (5,000 sites and 20 species) | |||
one-component | 86468.5 | 86506.5 | 86630.3 | 82.1 ± 7.9 |
two-component | 86302.7 | 86378.7 | 86626.4 | 37.8 ± 13.5 |
three-component | 86222.7 | 86336.7 | 86708.2 | 47.9 ± 10.7 |
four-component | 86167.6 | 86319.6 | 86814.9 | 69.0 ± 17.2 |
five-component | 86126.8 | 86316.8 | 86936.0 | 82.2 ± 21.2 |
Six-component | 86087.1 | 86315.1 | 87058.1 | NC |
covarion | 86300.7 | 86340.7 | 86471.0 | 0 |
| Â | plastid dataset (3,754 sites and 22 species) | |||
one-component | 78225.2 | 78267.2 | 78398.0 | 75.3 ± 8.8 |
two-component | 78056.4 | 78140.4 | 78402.1 | 34.2 ± 24.5 |
three-component | 77996.7 | 78122.7 | 78515.2 | 49.8 ± 15.6 |
four-component | 77925.8 | 78093.8 | 78617.2 | 60.3 ± 21.0 |
five-component | 77926.2 | 78136.2 | 78790.4 | 72.4 ± 22.0 |
six-component | 77900.4 | 78152.4 | 78937.5 | NC |
covarion | 78070.9 | 78114.9 | 78252.0 | 0 |
| Â | mitochondrial mammal dataset (3,591 sites and 17 species) | |||
one-component | 44285.9 | 44317.9 | 44416.9 | 45.9 ± 3.7 |
two-component | 44154.8 | 44218.8 | 44416.8 | 16.6 ± 7.5 |
three-component | 44127.6 | 44223.6 | 44520.5 | 34.2 ± 12.3 |
four-component | 44081.2 | 44209.2 | 44605.1 | 38.2 ± 15.4 |
five-component | 44071.9 | 44231.9 | 44726.8 | NC |
six-component | 44072.3 | 44264.3 | 44858.2 | NC |
covarion | 44187.1 | 44222.1 | 44330.4 | 0 |