Model | ℓ | ω0 | Parameters | Sig | Positive Sites |
---|---|---|---|---|---|
Lineage-specific | Â | Â | Â | Â | Â |
   M0: one ratio... | -11770.60 | 0.686 | = ω0 |  |  |
   M0: one ratio-2 | -4303.29 | 0.694 | = ω0 |  |  |
   PD-PS.............. | -4300.30 |  | ω PD = 1.41, ωPS = 0.63 | P = 0.014 |  |
   Free ratios....... | -11580.19 |  | see Figure 1 | P << 0.001 |  |
   Free ratios-2.... | -11591.23 | 1 | ω 0 constrained to 1 | P << 0.01 |  |
Site-specific | Â | Â | Â | Â | Â |
   M1: neutral....... | -11547.79 | 0.876 | p0 = 0.124, ω0 = 0 |  |  |
 |  |  | p1 = 0.876, ω2 = 1 |  |  |
   M2: selection... | -11266.10 | 1.64 | p0 = 0.124, ω0 = 0 | P << 0.001 | 30 (PP ≥ 0.99) |
 |  |  | p1 = 0.605, ω2 = 1 |  | 2 (0.95 ≤ PP < 0.99) |
 |  |  | p2 = 0.271, ω 2 = 3.81 |  | 9 (PP < 0.95) |
   M3: discrete..... | -11096.30 | 0.971 | p0 = 0.346, ω0 = 0.078 | P << 0.001 | 21 (PP ≥ 0.99) |
 |  |  | p1 = 0.42, ω2 = 0.83 |  | 5 (0.95 ≤ PP < 0.99) |
 |  |  | p2 = 0.234, ω 2 = 2.55 |  | 8 (PP < 0.95) |
   M7: beta........... | -11179.33 | 0.532 | p = 0.332, q = 0.293 |  |  |
   M8: beta&ω...... | -11073.18 | 0.899 | p0 = 0.81, p = 0.352, q = 0.348 | P << 0.001 | 15 (PP ≥ 0.99) |
 |  |  | p1 = 0.19, ω = 2.58 |  | 7 (0.95 ≤ PP < 0.99) |
 |  |  |  |  | 6 (PP < 0.95) |