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Figure 4 | BMC Evolutionary Biology

Figure 4

From: Chromosomal instability in Afrotheria: fragile sites, evolutionary breakpoints and phylogenetic inference from genome sequence assemblies

Figure 4

Phylogenetic tree showing the HSA 3/21 chromosomal syntenies in different mammalian species. In this scheme we place Afrotheria at the root. There are other competing hypotheses for the basal resolution of Placentalia (see text for details). The ancestral chromosomal forms corresponding to HSA 3/21 are represented as single conserved entities in the amniote, therian, eutherian and boreoeutherian ancestors. Source references for the species shown in the tree are: African elephant [23], domestic pig [84], rabbit [85], tree shrew [86], grey squirrel [87], domestic cat [88], aardvark [53], the xenarthran taxa the amadillo and lesser anteater [64], and the ENSEMBL genome database [82] for the rat, mouse, cattle, dog, opossum and chicken sequence alignments. The asterisks indicate the unequivocal identification of the HSA 3p/21 synteny based on reciprocal chromosome painting or data from the ENSEMBL genome database [82]. The estimated divergence dates follow [11]. The opossum and the chicken are included as representative outgroups species. Inset shows G-banding comparisons between elephant chromosomes 3 (LAF 3) and 21 (LAF 21) and aardvark chromosome 2 (OAF 2) showing the regions of homology to human chromosomes 3, 5 and 21 (HSA 3, HSA 5 and HSA 21); syntenic boundaries are derived from reciprocal chromosome painting data [23].

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