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Table 4 Clustering analysis

From: Transposable element distribution, abundance and role in genome size variation in the genus Oryza

A B C D
O. glaberrima [AA; 357 Mbp] 1610 0 -
O. rufipogon [AA; 439 Mbp] 1133 0 -
O. nivara [AA; 448 Mbp] 1448 0 -
O. punctata [BB; 425 Mbp] 1508 0 -
O. officinalis [CC; 651 Mbp] 1626 4 5
O. minuta [BBCC; 1124 Mbp] 3940 3 10
O. alta [CCDD; 1008 Mbp] 3198 19 24
O. australiensis [EE; 965 Mbp] 2738 16 11
O. brachyantha [FF; 362 Mbp] 2069 4 15
O. granulata [GG: 882 Mbp] 2429 9 7
O. coarctata [HHKK] 7143 8 21
O. ridleyi [HHJJ; 1283 Mbp] 5546 65 69
  1. Results of the clustering analysis carried out on the sequence reads that did not show any significant hits with previously annotated repeats. B: Number of sequence reads. C: Number of clusters containing more than 3 sequences. D: Number of sequences included in the largest cluster.