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Table 1 Gene conversion analysis for TLR1 and TLR6 sequences from nine mammalian species

From: Gene conversion limits divergence of mammalian TLR1 and TLR6

 

Fragments

   

Sequence names

BC KA pvalue

Begin

End

Length

Num Poly

Num Dif

Total Difs

TLR1HS;TLR6HS

1.98 × 10-41

1289

2204

916

513

35

538

TLR1PT;TLR6PT

3.28 × 10-37

1289

2208

920

382

35

557

TLR1Ma;TLR6Ma

5.92 × 10-43

1289

2204

916

370

22

553

TLR1MM;TLR6MM

2.66 × 10-69

1284

2203

920

381

11

623

TLR1RN;TLR6RN

3.52 × 10-74

1306

2198

893

370

5

631

TLR1EE;TLR6EE

2.34 × 10-58

1281

2208

928

384

14

586

TLR1BT;TLR6BT

1.96 × 10-44

1305

2287

982

414

23

532

TLR1SS;TLR6SS

1.17 × 10-43

1281

2313

1033

434

26

524

TLR1CF;TLR6CF

1.49 × 10-44

1289

2208

920

382

16

535

  1. BC KA p-values are Bonferroni-corrected Karlin-Altschul [34] p-values; the position of similar fragments is given with respect to the aligned human TLR1 DNA sequence [see Additional file 4]. "Num Poly" is the number of polymorphic sites in the fragment. "Num Dif" is the number of mismatches within the fragment. "Tot Difs" is the total number of mismatches between two sequences. HS: Homo sapiens; PT; Pan Troglodytes; Ma: Macaca mulatta; MM: Mus musculus; RN: Rattus Norvegicus; EE: Erinaceus europaeus; BT: Bos taurus; SS: Sus scrofa; CF: Canis familiaris.
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BMC Ecology and Evolution

ISSN: 2730-7182

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