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Table 1 Results of mitochondrial genome replication model analyses

From: Comparative mitochondrial genomics of snakes: extraordinary substitution rate dynamics and functionality of the duplicate control region

 

Individual model

Mixed model

Species

O H C R 1 MathType@MTEF@5@5@+=feaafiart1ev1aaatCvAUfKttLearuWrP9MDH5MBPbIqV92AaeXatLxBI9gBaebbnrfifHhDYfgasaacH8akY=wiFfYdH8Gipec8Eeeu0xXdbba9frFj0=OqFfea0dXdd9vqai=hGuQ8kuc9pgc9s8qqaq=dirpe0xb9q8qiLsFr0=vr0=vr0dc8meaabaqaciaacaGaaeqabaqabeGadaaakeaacqWGpbWtdaqhaaWcbaGaemisaGeabaGaem4qamKaemOuaiLaeGymaedaaaaa@3245@

O H C R 2 MathType@MTEF@5@5@+=feaafiart1ev1aaatCvAUfKttLearuWrP9MDH5MBPbIqV92AaeXatLxBI9gBaebbnrfifHhDYfgasaacH8akY=wiFfYdH8Gipec8Eeeu0xXdbba9frFj0=OqFfea0dXdd9vqai=hGuQ8kuc9pgc9s8qqaq=dirpe0xb9q8qiLsFr0=vr0=vr0dc8meaabaqaciaacaGaaeqabaqabeGadaaakeaacqWGpbWtdaqhaaWcbaGaemisaGeabaGaem4qamKaemOuaiLaeGOmaidaaaaa@3247@

O H C R 1 + O H C R 2 MathType@MTEF@5@5@+=feaafiart1ev1aaatCvAUfKttLearuWrP9MDH5MBPbIqV92AaeXatLxBI9gBaebbnrfifHhDYfgasaacH8akY=wiFfYdH8Gipec8Eeeu0xXdbba9frFj0=OqFfea0dXdd9vqai=hGuQ8kuc9pgc9s8qqaq=dirpe0xb9q8qiLsFr0=vr0=vr0dc8meaabaqaciaacaGaaeqabaqabeGadaaakeaacqWGpbWtdaqhaaWcbaGaemisaGeabaGaem4qamKaemOuaiLaeGymaedaaOGaey4kaSIaem4ta80aa0baaSqaaiabdIeaibqaaiabdoeadjabdkfasjabikdaYaaaaaa@38CC@

% O H C R 2 MathType@MTEF@5@5@+=feaafiart1ev1aaatCvAUfKttLearuWrP9MDH5MBPbIqV92AaeXatLxBI9gBaebbnrfifHhDYfgasaacH8akY=wiFfYdH8Gipec8Eeeu0xXdbba9frFj0=OqFfea0dXdd9vqai=hGuQ8kuc9pgc9s8qqaq=dirpe0xb9q8qiLsFr0=vr0=vr0dc8meaabaqaciaacaGaaeqabaqabeGadaaakeaacqWGpbWtdaqhaaWcbaGaemisaGeabaGaem4qamKaemOuaiLaeGOmaidaaaaa@3247@

Agkistrodon piscivorus

1179.2 (18%)

1178.0 (60%)

1179.0 (22%)

99%

Pantherophis slowinskii

1164.6 (29%)

1164.1 (47%)

1164.8 (24%)

54%

Dinodon semicarinatus

1167.1 (21%)

1166.2 (57%)

1167.1 (22%)

78%

Ovophis okinavensis

1252.7 (38%)

1252.6 (45%)

1253.5 (17%)

59%

Boa constrictor

854.5 (29%)

853.9 (50%)

854.8 (21%)

64%

Acrochordus granulatus

1245.0 (2%)

1241.5 (72%)

1242.5 (26%)

100%

Xenopeltis unicolor

1159.4 (31%)

1159.0 (45%)

1159.6 (24%)

50%

Python regius

1133.0 (1%)

1128.9 (72%)

1130.0 (26%)

100%

Cylindrophis ruffus

1129.8 (70%)

1132.6 (4%)

1130.8 (26%)

< 1%

  1. Negative log likelihood values and Akaike weights (in parentheses) for individual origin of replication models and the mixed model, along with the most likely CR2 preference parameter in the mixed model, for alethinophidian snakes.
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BMC Ecology and Evolution

ISSN: 2730-7182

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