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Table 7 List of cloned and predicted genes utilized for analysis of synteny and phylogeny of the extended β subunit gene family in vertebrates.

From: Molecular cloning and analysis of zebrafish voltage-gated sodium channel beta subunit genes: implications for the evolution of electrical signaling in vertebrates

  

Analysis of Synteny

 

Analysis of Phylogeny

Gene

Species

Accession No. (Gene)

Physical Location

Accession No. (Protein)

SCN1B

Homo sapiens

ENSG00000105711

chr. 19 (FWD, 40.21–40.22 Mb)

ENSP00000262631

 

Rattus norvegicus

ENSRNOG00000021102

chr. 1 (REV, 86.16–86.17 Mb)

n/a

 

Danio rerio

ENSDARG00000060222

chr. 16 (REV, 47.82–47.83 Mb)

ABF47239

SCN2B

Homo sapiens

ENSG00000149575

chr. 11 (REV, 117.54–117.55 Mb)

ENSP00000278947

 

Rattus norvegicus

ENSRNOG00000016221

chr. 8 (FWD, 48.07–48.08 Mb)

n/a

 

Danio rerio

ENSDARG00000041176

chr. 15 (REV, 27.32 Mb)

ABF47241.

 

Xenopus tropicalis

ENSXETESTG00000009930

*scaffold_39 (FWD, 0.58–0.59 Mb)

ENSXETESTP00000016971

 

Gallus gallus

ENSGALG00000021272

chr. 24 (REV, 5.10–5.11 Mb)

ENSGALP00000033652

SCN3B

Homo sapiens

ENSG00000166257

chr. 11 (REV, 123.01–123.03 Mb)

ENSP00000299333

 

Rattus norvegicus

ENSRNOG00000006937

chr. 8 (FWD, 43.23–43.25 Mb)

n/a

 

Danio rerio

ENSDARESTG00000011553

chr. 15 (REV, 28.62–28.64 Mb)

ABF47244

 

Xenopus tropicalis

ENSXETESTG00000002589

*scaffold_298 (FWD, 0.94–0.96 Mb)

ENSXETESTP00000004357

 

Gallus gallus

ENSGALESTG00000012587

chr. 24 (FWD, 2.82–2.83 Mb)

ENSGALESTP00000019882

SCN4B.1

Homo sapiens

ENSG00000177098

chr. 11 (REV, 117.51–117.53 Mb)

ENSP00000322460

 

Rattus norvegicus

ENSRNOG00000026679

chr. 8 (FWD, 48.09–48.11 Mb)

n/a

 

Danio rerio

ENSDARESTG00000010162

chr. 15 (REV, 27.26–27.29 Mb)

ABF47245

 

Xenopus tropicalis

ENSXETESTG00000009931

*scaffold_39 (FWD, 0.61–0.63 Mb)

ENSXETESTP00000016972

 

Gallus gallus

ENSGALG00000007409

chr. 24 (REV, 5.10 Mb)

ENSGALP00000011971

SCN4B.2

Danio rerio

ENSDARESTG00000000878

chr. 5 (FWD, 38.08–38.10 Mb)

ABF47246

MPZ

Homo sapiens

ENSG00000158887

chr. 1 (REV, 159.54–159.55 Mb)

ENSP00000289928

 

Rattus norvegicus

ENSRNOESTG00000011377

chr. 13 (FWD, 87.04–87.05 Mb)

n/a

 

Danio rerio

ENSDARG00000038609

chr. 2 (REV, 46.60–46.62 Mb)

ENSDARP00000056371

 

Gallus gallus

ENSGALESTG00000015635

*chr. Un (REV, 60.79–60.80 Mb)

ENSGALP00000008810

MPZL1 isoA

Homo sapiens

ENSG00000197965

chr. 1 (FWD, 165.96–166.03 Mb)

ENSP00000352513

 

Rattus norvegicus

ENSRNOG00000003248

chr. 13 (REV, 81.32–81.36 Mb)

n/a

 

Xenopus tropicalis

ENSXETG00000023014

*scaffold_195 (REV, 1.78–1.79 Mb)

ENSXETP00000049765

 

Gallus gallus

ENSGALG00000015438

chr. 1 (REV, 85.41–85.44 Mb)

ENSGALP00000024855

EVA1

Homo sapiens

ENSG00000149573

chr. 11 (REV, 117.63–117.64 Mb)

ENSP00000278937

 

Rattus norvegicus

ENSRNOG00000016085

chr. 8 (FWD, 47.99–48.00 Mb)

n/a

 

Danio rerio

ENSDARG00000027345

chr. 5 (FWD, 38.05–38.07 Mb)

ENSDARP00000032601

 

Xenopus tropicalis

ENSXETESTG00000008504

*scaffold_39 (FWD, 0.51–0.54 Mb)

ENSXETESTP00000014524

 

Gallus gallus

ENSGALG00000007412

chr. 24 (REV, 5.12–5.13 Mb)

ENSGALP00000011976

"EVA1-like"

Homo sapiens

ENSG00000160588

chr. 11 (REV, 117.60–117.63 Mb)

ENSP00000278949

 

Rattus norvegicus

ENSRNOG00000026753

chr. 8 (FWD, 48.00–48.01 Mb)

n/a

 

Gallus gallus

ENSGALG00000021271

chr. 24 (REV, 5.11–5.12 Mb)

ENSGALP00000033649

PSMC4

Homo sapiens

ENSG00000013275

chr. 19 (FWD, 45.17–45.18 Mb)

n/a

 

Rattus norvegicus

ENSRNOG00000018994

chr. 1 (REV, 83.15–83.16 Mb)

n/a

 

Danio rerio

ENSDARG00000027099

chr. 16 (FWD, 47.99-5-48.00 Mb)

n/a

 

Xenopus tropicalis

ENSXETG00000014266

*scaffold_1060 (REV, 0.17 Mb)

n/a

FBL

Homo sapiens

ENSG00000105202

chr. 19 (REV, 45.02–45.03 Mb)

n/a

 

Rattus norvegicus

ENSRNOG00000019229

chr. 1 (FWD, 83.27–83.28 Mb)

n/a

 

Danio rerio

ENSDARG00000053912

chr. 16 (FWD, 47.49–47.50 Mb)

n/a

 

Xenopus tropicalis

ENSXETG00000017830

*scaffold_1073 (REV, 0.14 Mb)

n/a

APOA1

Homo sapiens

ENSG00000118137

chr. 11 (REV, 116.21 Mb)

n/a

 

Danio rerio

ENSDARG00000012076

chr. 5 (REV, 38.04 Mb)

n/a

 

Gallus gallus

ENSGALG00000007114

chr. 24 (REV, 4.79–4.80 Mb)

n/a

  1. All genes and proteins are identified by Ensembl accession numbers, except for cloned zebrafish beta subunit protein sequences (which begin with ABF and represent accession numbers assigned by GenBank). * = unmapped scaffolds in Ensembl database. FWD = forward and REV = reverse and refers to gene orientation. n/a = not applicable (e.g. proteins for this species were not included in phylogenetic analysis).