Comparative sequence analysis of the complete set of 40S ribosomal proteins in the Senegalese sole (Solea senegalensis Kaup) and Atlantic halibut (Hippoglossus hippoglossus L.) (Teleostei: Pleuronectiformes): phylogeny and tissue- and development-specific expression

Manchado, Manuel; Infante, Carlos; Asensio, Esther; Cañavate, Jose Pedro; Douglas, Susan E

doi:10.1186/1471-2148-7-107

Table 3 Amino acid comparisons of the RPs from S. senegalensis (Sse) and H. hippoglossus (Hhi) with those of I. punctatus (Ipu), F. rubripes (Fru) and human (Hsa). Similarity values for Senegalese sole and Atlantic halibut are separated by "/".

From: Comparative sequence analysis of the complete set of 40S ribosomal proteins in the Senegalese sole (Solea senegalensis Kaup) and Atlantic halibut (Hippoglossus hippoglossus L.) (Teleostei: Pleuronectiformes): phylogeny and tissue- and development-specific expression

	Number of aminoacids					Similarity (%)
Gene	Sse	Hhi	Ipu	Fru	Hsa	Sse/Hhi	Ipu	Fru	Hsa
Sa	313	309	317	306	295	91.3	88.5/88.0	90.5/89.5	86.8/88.1
S2	280	285	278	279	293	94.0	96.3/91.0	97.3/92.0	90.0/85.0
S3	245	246	245	245	243	97.6	98.8/96.3	99.2/96.7	95.9/96.3
S3a	266	266	266	266	264	96.6	94.7/94.7	96.2/95.5	93.9/93.6
S4	263	263	263	263	263 263	96.6	95.8/93.9	95.8/94.3	93.5/92.8^a 89.4/88.2^b
S5	203	203	203	203	204	99.5	99.0/98.5	97.0/96.6	97.5/97.0
S6	249	249	249	249	249	98.4	95.6/94.0	98.4/97.2	95.6/94.4
S7	194	194	194	194	194	98.5	96.4/95.9	98.5/99.0	96.9/96.4
S8	208	208	208	208	208	98.1	89.4/88.9	96.2/94.2	94.2/93.8
S9	194	194	194	194	194	97.9	95.9/96.9	97.4/96.6	95.9/96.9
S10	166	166	166	166	165	97.6	96.4/94.6	97.0/95.8	90.3/89.7
S11	161	161	159	161	158	98.1	90.6/91.8	97.5/96.9	89.2/89.2
S12	132	132	132	132	132	97.7	97.7/95.5	98.5/97.7	97.7/96.2
S13	151	151	151	151	151	98.0	98.7/98.0	100/98.0	98.7/96.7
S14	151	151	151	151	151	96.0	95.4/99.3	96.0/100	96.0/100
S15	145	145	145	145	145	98.6	96.6/96.6	99.3/99.3	94.5/94.5
S15a	130	130	130	130	130	100	96.9/96.9	99.2/99.2	97.7/97.7
S16	146	146	146	146	146	97.9	96.6/97.3	95.2/95.2	96.6/95.9
S17	134	134	134	134	135	92.5	92.5/96.3	91.8/97.0	92.5/96.3
S18	152	152	152	152	152	98.7	99.3/98.0	100/98.7	98.0/98.0
S19	147	147	147	146	145	92.5	89.1/87.1	95.2/95.9	86.9/84.1
S20	119	119	119	119	119	98.3	98.3/97.5	100/98.3	98.3/97.5
S21	83	83	83	83	83	92.8	92.8/90.4	95.2/89.2	94.0/95.2
S23	143	143	143	143	143	100	99.3/99.3	100/100	98.6/98.6
S24	131	132	131	131	133	98.5	96.9/96.2	95.4/97.7	90.1/90.9
S25	123	131	124	123	125	95.1	83.1/82.3	96.7/95.1	82.4/80.8
S26	115	115	115	115	115	98.3	93.0/94.8^c 93.9/94.8^d	96.5/98.3	93.9/95.7
S27-1	84	84	84	84	84	See Table 4
S27-2	84	84	84	84	84
S27-3		84
S27-4		82
S27a	156	156	156	156	156	100	100/100	100/100	98.7/98.7
S28	69	69	69	69	69	98.6	100/98.6	97.1/95.7	95.7/94.2
S29	56	56	56	56	56	98.2	100/98.2	100/98.2	98.2/96.4
S30	133	133	133	133	133	94.7	85.8/85.0	90.3/91.0	80.6/81.2
Overall						92.1	94.0/90.9	95.4/92.5	92.8/89.8

^a and ^b refer to similarities to H. sapiens RPS4X and RPS4Y isoforms, respectively.
^c and ^d refer to similarities to I. punctatus RPS26-1 and RPS26-2 isoforms, respectively.

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