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Table 3 Amino acid comparisons of the RPs from S. senegalensis (Sse) and H. hippoglossus (Hhi) with those of I. punctatus (Ipu), F. rubripes (Fru) and human (Hsa). Similarity values for Senegalese sole and Atlantic halibut are separated by "/".

From: Comparative sequence analysis of the complete set of 40S ribosomal proteins in the Senegalese sole (Solea senegalensis Kaup) and Atlantic halibut (Hippoglossus hippoglossus L.) (Teleostei: Pleuronectiformes): phylogeny and tissue- and development-specific expression

  Number of aminoacids Similarity (%)
Gene Sse Hhi Ipu Fru Hsa Sse/Hhi Ipu Fru Hsa
Sa 313 309 317 306 295 91.3 88.5/88.0 90.5/89.5 86.8/88.1
S2 280 285 278 279 293 94.0 96.3/91.0 97.3/92.0 90.0/85.0
S3 245 246 245 245 243 97.6 98.8/96.3 99.2/96.7 95.9/96.3
S3a 266 266 266 266 264 96.6 94.7/94.7 96.2/95.5 93.9/93.6
S4 263 263 263 263 263
263
96.6 95.8/93.9 95.8/94.3 93.5/92.8a
89.4/88.2b
S5 203 203 203 203 204 99.5 99.0/98.5 97.0/96.6 97.5/97.0
S6 249 249 249 249 249 98.4 95.6/94.0 98.4/97.2 95.6/94.4
S7 194 194 194 194 194 98.5 96.4/95.9 98.5/99.0 96.9/96.4
S8 208 208 208 208 208 98.1 89.4/88.9 96.2/94.2 94.2/93.8
S9 194 194 194 194 194 97.9 95.9/96.9 97.4/96.6 95.9/96.9
S10 166 166 166 166 165 97.6 96.4/94.6 97.0/95.8 90.3/89.7
S11 161 161 159 161 158 98.1 90.6/91.8 97.5/96.9 89.2/89.2
S12 132 132 132 132 132 97.7 97.7/95.5 98.5/97.7 97.7/96.2
S13 151 151 151 151 151 98.0 98.7/98.0 100/98.0 98.7/96.7
S14 151 151 151 151 151 96.0 95.4/99.3 96.0/100 96.0/100
S15 145 145 145 145 145 98.6 96.6/96.6 99.3/99.3 94.5/94.5
S15a 130 130 130 130 130 100 96.9/96.9 99.2/99.2 97.7/97.7
S16 146 146 146 146 146 97.9 96.6/97.3 95.2/95.2 96.6/95.9
S17 134 134 134 134 135 92.5 92.5/96.3 91.8/97.0 92.5/96.3
S18 152 152 152 152 152 98.7 99.3/98.0 100/98.7 98.0/98.0
S19 147 147 147 146 145 92.5 89.1/87.1 95.2/95.9 86.9/84.1
S20 119 119 119 119 119 98.3 98.3/97.5 100/98.3 98.3/97.5
S21 83 83 83 83 83 92.8 92.8/90.4 95.2/89.2 94.0/95.2
S23 143 143 143 143 143 100 99.3/99.3 100/100 98.6/98.6
S24 131 132 131 131 133 98.5 96.9/96.2 95.4/97.7 90.1/90.9
S25 123 131 124 123 125 95.1 83.1/82.3 96.7/95.1 82.4/80.8
S26 115 115 115 115 115 98.3 93.0/94.8c
93.9/94.8d
96.5/98.3 93.9/95.7
S27-1 84 84 84 84 84 See Table 4    
S27-2 84 84 84 84 84     
S27-3   84        
S27-4   82        
S27a 156 156 156 156 156 100 100/100 100/100 98.7/98.7
S28 69 69 69 69 69 98.6 100/98.6 97.1/95.7 95.7/94.2
S29 56 56 56 56 56 98.2 100/98.2 100/98.2 98.2/96.4
S30 133 133 133 133 133 94.7 85.8/85.0 90.3/91.0 80.6/81.2
Overall       92.1 94.0/90.9 95.4/92.5 92.8/89.8
  1. a and b refer to similarities to H. sapiens RPS4X and RPS4Y isoforms, respectively.
  2. c and d refer to similarities to I. punctatus RPS26-1 and RPS26-2 isoforms, respectively.