MRP (A) and AV (B) fungal supertrees derived from 4,805 fungal gene families. Bootstrap scores for all nodes are displayed. The AV supertree method makes use of input tree branch lengths. Rhizopus oryzae has been selected as an outgroup. The Basidiomycota and Ascomycota phyla form distinct clades. Subphyla and class clades are highlighted. Two clades of special interest include the node that contains the organisms that translate CTG as serine instead of leucine, and the node that contains the genomes that have undergone a genome duplication (WGD). Topological differences between supertree phylogenies are highlighted in red font.