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Table 3 Accession numbers and species identification for taxa in SWS1 data set

From: Short-wavelength sensitive opsin (SWS1) as a new marker for vertebrate phylogenetics

Class (order) Common Name Scientific name Accession #
Actinopterygii    
   Cyprinodontiformes killifish Lucania goodei AY296735
   Perciformes Malawi eye-biter Dimidiochromis compressiceps AF191220
  Fuelleborn's cichlid Labeotropheus fuelleborni AF191223
  zebra mbuna Metriaclima zebra AF191219
  Nile tilapia Oreochromis niloticus AF191221
   Pleuronectiformes Atlantic halibut Hippoglossus hippoglossus AF156264
   Cypriniformes goldfish Carassius auratus D85863
  carp Cyprinus carpio AB113669
  zebrafish Danio rerio AB087810
   Osmeriformes smelt Plecoglossus altivelis AB098706
   Salmoniformes pink salmon Oncorhynchus gorbuscha AY214153
  chum salmon Oncorhynchus keta AY214143
  coho salmon Oncorhynchus kisutch AY214148
  rainbow trout Oncorhynchus mykiss AF425074
  sockeye salmon Oncorhynchus nerka AY214158
  chinook salmon Oncorhynchus tshawytscha AY214138
  Atlantic salmon Salmo salar AY214133
Amphibia    
   Anura African clawed frog Xenopus laevis BC084882
  American bullfrog Rana catesbeiana AB001983
   Caudata tiger salamander Ambystoma tigrinum AF038948
  firebelly newt Cynops pyrrhogaster AB052889
Aves    
   Galliformes chicken Gallus gallus NM_205438
   Ciconiiformes Humboldts penguin Spheniscus humboldti AJ277991
   Columbiformes pigeon Columba livia AJ238856
   Psittaciformes budgerigar Melopsittacus undulatus Y11787
   Passeriformes common canary Serinus canaria AJ277922
  Siberian rubythroat Luscinia calliope AY274226
  bluethroat Luscinia svecica AY274225
  blue tit Parus caeruleus AY274220
  great tit Parus major AY274221
  marsh tit Parus palustris AY274222
  yellow crowned bishop Euplectes afer AY274223
  red bishop Euplectes orix AY274224
  zebra finch Taenopygia guttata AF222331
Mammalia    
   Artiodactyla cow Bos taurus U92557
  pig Sus scrofa NM_214090
   Carnivora dog Canis familiaris XM_539386
   Primates white-tufted-ear marmoset Callithrix jacchus L76201
  mantled howler monkey Alouatta palliata AH005790
  weeping capuchin monkey Cebus olivaceus AH005810
  Bolivian squirrel monkey Saimiri boliviensis U53875
  crab-eating macaque Macaca fascicularis AF158977
  talapoin Miopithecus talapoin L76226
  gorilla Gorilla gorilla AH005811
  human Homo sapiens AH003620
  chimpanzee Pan troglodytes AH005813
  brown lemur Eulemur fulvus AB111464
  western tarsier Tarsius bancanus AB111463
   Proboscidea African elephant Loxodonta africana AY686753
   Rodentia guinea pig Cavia porcellus AY552608
  Djungarian hamster Phodopus sungorus AY029604
  house mouse Mus musculus AH005191
  Norway rat Rattus norvegicus AF051163
   Sirenia Caribbean manatee Trichechus manatus AY228443
   Dasyuromorpha dunnart Sminthopsis crassicaudata AY442173
   Peramelemorpha short nosed bandicoot Isoodon obesulus AY726544
   Diprotodontia tammar wallaby Macropus eugenii AY286017
  quokka Setonix brachyurus AY726545
Squamata    
  tokay gecko Gekko gecko AY024356
  day gecko Phelsuma madagascariensis AF074045
  green anole Anolis carolinensis AH007736
Cephalaspidomorphi    
   Petromyzontiformes pouched lamprey Geotria australis AY366495