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Table 1 Likelihood paramater estimates under the lineage-specific models.

From: Adaptive evolution of Hox-gene homeodomains after cluster duplications

Model PS-d N PS-d S PD-d N PD-d S ω0 ωPCD Sig.
Hox1         
   One ratio -707.88      0.0096   
   Two ratio -705.14      0.0046 0.1250 P < 0.05
Hox2         
   One ratio -800.02 0.0048 0.5967 0.0025 0.3130 0.0080   
   Two ratio -798.08 0.0037 0.6313 0.0090 0.6700 0.0058 0.1334 0.05
Hox3         
   One ratio -989.99 0.0042 1.1187 0.0003 0.0718 0.0037   
   Two ratio -984.72 0.0034 1.3424 0.0050 0 0.0025 A: (0/0)
B: (1.2/0)
D: (1/0)
P << 0.01
Hox4         
   One ratio -1573.85 0.0046 0.4348 0.0081 0.7736 0.0105   
   Two ratio -1570.91 0.0034 0.4518 0.0151 0.5811 0.0076 0.0259 P < 0.05
Hox5         
   One ratio -1015.97 0.0028 0.8522 0.0266 8.1561 0.0033   
   Two ratio -1014.86 0.0025 0.9172 0.0279 1.4231 0.0027 0.0196 n.s.
Hox6         
   One ratio -1309.19 0.0110 0.7089 0.0242 1.5604 0.0155   
   Two ratio -1297.90 0.0096 0.7323 0.0337 0.5095 0.0131 A: (0/0)
B: (3.5/0)
C: (10/0)
P << 0.01
Hox7         
   One ratio -701.50 0.0032 0.8238 0 0 0.0039   
   Two ratio -696.90 0.0025 1.0950 0.0037 0 0.0023 (0.5/0) P << 0.01
Hox8         
   One ratio -1092.36 0.0055 0.3889 0.0129 0.9167 0.0141   
   Two ratio -1089.88 0.0041 0.4206 0.0204 0.4981 0.0098 0.0409 P < 0.05
Hox9         
   One ratio -1389.70 0.0042 0.8239 0.0112 2.1879 0.0101   
   Two ratio -1377.10 0.0004 0.6179 0.0110 0.0950 0.0054 0.1156 P << 0.01
Hox10         
   One ratio -1790.54 0.0118 0.3296 0.0204 0.5690 0.0359   
   Two ratio -1783.60 0.0124 0.5521 0.0225 0 0.0224 (4.5/0) P << 0.01
Hox11         
   One ratio -1210.27 0.0054 0.5091 0.0132 1.2578 0.0105   
   Two ratio -1206.53 0.0037 0.5339 0.0244 0.8452 0.0070 0.0288 P << 0.01
Hox12         
   One ratio -1092.80 0.0144 0.6274 0.0545 2.3793 0.0229   
   Two ratio -1092.72 0.0141 0.6378 0.0563 1.8156 0.0222 0.031 n.s.
Hox13         
   One ratio -1745.34 0.0171 0.7425 0.0419 1.8193 0.0230   
   Two ratio -1745.61 0.0160 0.7516 0.0496 0.9426 0.0212 0.0526 0.063
  1. Parameters that indicate rate accelerations are in bold. ℓ, likelihood of the model. Sig., significance of the model.