Table 2 Most common 8-, 9- and 10-mers in Pasteurellacean genome sequences
From: Evolution of competence and DNA uptake specificity in the Pasteurellaceae
Genomea | %G+C | Size (Mb) | Most common 10-merb (number, fold over-rep) | Most common 9-merb (number, fold over-rep) | Most common 8-merb (number, fold over-rep) |
|---|---|---|---|---|---|
Hin | 38.1 | 1.8 | AAAGTGCGGT (1115, 429X) | AAGTGCGGT (1471, 175X) | AAGTGCGG (1687, 63X) |
Aac | 44.4 | 2.1 | AAAGTGCGGT (1422, 384X) | AAGTGCGGT (1760, 132X) | AAGTGCGG (1863, 39X) |
Pmu | 40.4 | 2.3 | AAAGTGCGGT (700, 200X) | AAGTGCGGT (927, 79X) | AAGTGCGG (1013, 26X) |
Hso | 37 | 2.1 | AAAGTGCGGT (776, 273X) | AAGTGCGGT (1216, 135X) | AAGTGCGG (1446, 51X) |
Msu | 42.5 | 2.3 | AAAGTGCGGT (1297, 333X) | AAGTGCGGT (1485, 111X) | AAGTGCGG (1622, 46X) |
Apl | 41.4 | 2.2 | ACAAGCGGTC (429, 187X) | ACAAGCGGT (742, 68X) | CAAGCGGT (1361, 36X) |
Mha | 41 | 2.7 | ACAAGCGGTC (506, 181X) | ACAAGCGGT (973, 70X) | CAAGCGGT (1636, 48X) |
Hdu c | 38.2 | 1.76 | TTTTGCAAAA (106, 9.6X) AATAAGCGGTc (95, 21X) AACAAGCGGTc (85, 31X) | AATAAAAAA (251, 2.8X) ACAAGCGGTc (199, 23X) | AAAAATAA (680, 2.3X) CAAGCGGTc (464, 16X) |