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Table 2 Most common 8-, 9- and 10-mers in Pasteurellacean genome sequences

From: Evolution of competence and DNA uptake specificity in the Pasteurellaceae

Genomea %G+C Size (Mb) Most common 10-merb (number, fold over-rep) Most common 9-merb (number, fold over-rep) Most common 8-merb (number, fold over-rep)
Hin 38.1 1.8 AAAGTGCGGT (1115, 429X) AAGTGCGGT (1471, 175X) AAGTGCGG (1687, 63X)
Aac 44.4 2.1 AAAGTGCGGT (1422, 384X) AAGTGCGGT (1760, 132X) AAGTGCGG (1863, 39X)
Pmu 40.4 2.3 AAAGTGCGGT (700, 200X) AAGTGCGGT (927, 79X) AAGTGCGG (1013, 26X)
Hso 37 2.1 AAAGTGCGGT (776, 273X) AAGTGCGGT (1216, 135X) AAGTGCGG (1446, 51X)
Msu 42.5 2.3 AAAGTGCGGT (1297, 333X) AAGTGCGGT (1485, 111X) AAGTGCGG (1622, 46X)
Apl 41.4 2.2 ACAAGCGGTC (429, 187X) ACAAGCGGT (742, 68X) CAAGCGGT (1361, 36X)
Mha 41 2.7 ACAAGCGGTC (506, 181X) ACAAGCGGT (973, 70X) CAAGCGGT (1636, 48X)
Hdu c 38.2 1.76 TTTTGCAAAA (106, 9.6X)
AATAAGCGGTc (95, 21X)
AACAAGCGGTc (85, 31X)
AATAAAAAA (251, 2.8X)
ACAAGCGGTc (199, 23X)
AAAAATAA (680, 2.3X)
CAAGCGGTc (464, 16X)
  1. a Hin: H. influenzae; Aac: A.s actinomycetemcomitans; Pmu: P. multocida; Hso: H. somnus; Msu: M. succiniciproducens; Apl: A. pleuropneumoniae; Mha: M. haemolytica; Hdu: H. ducreyi.
  2. b The first number in parentheses is the combined number of copies of the sequence and its reverse complement. The second number in parentheses is the fold over-representation of each repeat compared to a random-sequence genome of the same size and base composition.
  3. c The additional entries for H. ducreyi are the copy numbers of the most frequent USS-like repeats.