Table 3 Distributions of LTR retrotransposons in five duplicated regions of maize.
From: Retrotranspositions in orthologous regions of closely related grass species
Regions | Copia | Gypsy | Others | Total | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
Ji | Opie | Fourf | Hoscotch | Huck | Grande | Cinful | Tekay | Milt | |||
orp1 | 4 | 5 | 3 | 1 | 3 | 1 | 3 | 20 | |||
orp2 | 5 | 1 | 2 | 2 | 1 | 11 | |||||
r1 | 8 | 3 | 1 | 2 | 1 | 3 | 18 | ||||
b1 | 3 | 2 | 5 | 1 | 1 | 12 | |||||
c1 | 2 | 4 | 3 | 1 | 1 | 3 | 14 | ||||
pl1 | 5 | 1 | 1 | 3 | 1 | 11 | |||||
tb1 | 2 | 1 | 1 | 1 | 1 | 1 | 4 | 11 | |||
tb2 | 1 | 1 | 1 | 4 | 7 | ||||||
tbp1 | 2 | 1 | 3 | 1 | 7 | ||||||
tbp2 | 2 | 3 | 1 | 3 | 9 | ||||||
Sum | 34 | 20 | 2 | 1 | 24 | 3 | 6 | 2 | 5 | 23 | 120 |
Total Length | 425 kb (copia-like) | 449.41 kb (gypsy-like) | |||||||||
39.01% (copia-like) | 36.89% (gypsy-like) | ||||||||||