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Table 2 Overview of the datasets used in phylogenetic reconstructions

From: The glycolytic pathway of Trimastix pyriformis is an evolutionary mosaic

dataset number of sequences number of aa alpha1 sequences with divergent aa composition2
hexokinase 28 263 0.98 Treponema denticola
glucose phosphate isomerase 40 431 0.78 Plasmodium falciparum
Dictyostelium discoideum
Aquifex aeolicus
fructose bisphosphate aldolase 25 268 0.67 Aquifex aeolicus
triose phosphate isomerase 31 211 0.62 Aquifex aeolicus
Dictyostelium discoideum
glyceraldehyde phosphate dehydrogenase 40 271 0.64  
phosphoglycerate kinase 34 277 0.67  
phosphoglycerate mutase 37 394 0.86 Desulfovibrio vulgaris
Gracilaria tenuistipitata
Porphyra purpurea
Encephalitozoon cuniculi
Halobacterium sp.
enolase 33 336 0.70  
pyruvate kinase 31 297 0.64 Giardia lamblia
pyruvate phosphate dikinase 29 682 0.51 Rickettsia prowazekii
Thermobifida fusca
  1. 1 the gamma shape parameter of the gamma distribution estimated using TREE-PUZZLE
  2. 2 based on the chi square tests for deviation of amino acid frequencies implemented in TREE-PUZZLE