Late Quaternary loss of genetic diversity in muskox (Ovibos)

Table 6 Summary of variable positions in the hypervariable region of modern and ancient muskoxen

Source	Sample	2	104	144	145	148	166	168	178
Modern	SH-OMMod01	C	C	G	C	C	T	C	T
	SH-OMMod02	.	.	.	.	.	.	.	.
	SH-OMMod03	.	.	.	.	.	.	T	.
	SH-OMMod04	.	.	.	.	.	.	T	C
	SH-OMMod05	.	.	.	.	.	.	.	.
	SH-OMMod06	.	.	.	.	.	.	.	.
	SH-OMMod07	.	.	.	.	.	.	T	.
	SH-OMMod08	.	.	.	.	.	.	T	.
	SH-OMModCl	.	.	A	.	.	.	-	.
New World	SH-Yuk01	.	.	A	T	.	.	-	.
	SH-OMArA03	.	.	.	.	.	.	-	.
	SH-OMArA04	.	.	.	.	.	.	-	.
	SH-OMArA05	.	.	.	.	.	.	-	.
Old World	SH-OMWra2	nd	.	.	.	.	.	-	.
	SH-OMYak12	nd	.	.	.	.	.	-	.
	SH-OMTai23658.A	.	.	.	.	.	.	-	.
	SH-OMTai23658.B	.	.	A	.	.	.	-	.
	EH-OMTai14	G	T	A	.	.	.	-	.
	EH-OMTai38	.	T	A	.	T	A	-	.
	EH-OMTai39	G	T	A	.	.	.	-	.
	EH-OMTai46	.	T	A	.	T	A	-	.

Notes. – Sample names from table 1. Base positions numbered from first readable base from 5' amplified fragment. Identity to first sequence designated by a dot; differences indicated by base sequence. Deletions indicated by "-". For some samples, specific bases were not covered; these are designated "nd" (not determined). [Accession numbers for modern sequences are GenBank: NC005044, U47063, U47065, U47067, U47069, U47071, U47073, U47075.] Extinct haplotypes as determined for cyt b and HV region are italicized.

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