From: Automatic selection of representative proteins for bacterial phylogeny
Gene | Class | Â | Name | COG | Rank | Coeff | S.Dev | Max |
---|---|---|---|---|---|---|---|---|
GidA | D | Â | glucose-inhibited division protein | 0445 | 23 | .92 | 4.27 | 11.90 |
- | R | Â | GTP-binding protein | 0012 | 43 | .94 | 3.84 | 12.43 |
RuvB | L | Â | Holliday junction DNA helicase | 2255 | 19 | .89 | 4.32 | 12.51 |
Pnp | J | Â | polynucleotide phosphorylase | 1185 | 25 | .86 | 4.94 | 13.11 |
PyrG | F | Â | CTP synthetase | 0504 | 26 | .91 | 4.19 | 13.95 |
LepA | N | Â | GTP-binding elongation factor | 0481 | 15 | .92 | 4.88 | 14.00 |
DnaX | L | Â | DNA polymerase III subunits gamma and tau | 2812 | 86 | .90 | 4.37 | 14.59 |
Mfd | LK | Â | transcription-repair coupling factor | 1197 | 31 | .88 | 4.82 | 14.94 |
UvrB | L | Â | DNA excision nuclease subunit B | 0556 | 12 | .93 | 4.44 | 16.29 |
InfB | J | Â | translation initiation factor IF-2 | 0532 | 32 | .90 | 4.59 | 17.46 |
Exo | L | Â | DNA polymerase I | 0258 | 59 | .89 | 4.85 | 17.60 |
PolC | L | Â | DNA polymerase III, alpha chain | 0587 | 61 | .77 | 6.43 | 17.81 |
RecA | L | Â | RecA protein | 0468 | 4 | .85 | 6.22 | 19.18 |
GyrA | L | Â | DNA gyrase subunit A | 0188 | 10 | .88 | 5.60 | 19.74 |
HflB | 0 | Â | cell division protein FtsH | 0465 | 2 | .86 | 5.29 | 19.89 |
ClpX | O | Â | ATP-dependent Clp protease, ClpX | 1219 | 13 | .89 | 5.12 | 20.10 |
ThrS | J | Â | threonyl-tRNA synthetase | 0441 | 33 | .77 | 6.94 | 20.19 |
Rho | K | Â | transcription termination factor rho | 1158 | 3 | .87 | 5.83 | 20.20 |
GroL | O | Â | GroEL, chaperone Hsp60 | 0459 | 8 | .92 | 5.90 | 20.35 |
ClpB | 0 | Â | ClpB protein | 0542 | 7 | .75 | 6.23 | 21.01 |
- | R | Â | putative GTP-binding protein | 1160 | 165 | .94 | 7.93 | 21.07 |
DnaK | 0 | Â | dnaK, chaperone Hsp70 | 0443 | 5 | .81 | 6.48 | 21.27 |
RpSA | J | Â | 30S ribosomal subunit protein S1 | 0539 | 38 | .88 | 8.14 | 22.48 |
RpoA | K | Â | DNA-directed RNA polymerase alpha chain | 0202 | 102 | .91 | 10.93 | 32.41 |
TrxB | 0 | Â | thioredoxin reductase | 0492 | 66 | .87 | 8.67 | 32.54 |
UvrC | L | Â | excinuclease ABC subunit C | 0322 | 133 | .93 | 6.67 | 32.68 |
NusA | K | Â | transcription pausing | 0195 | 106 | .83 | 11.11 | 39.39 |
QRI7 | O | Â | o-sialoglycoprotein endopeptidase | 0533 | 123 | .89 | 7.53 | 43.68 |
YidC | N | Â | 60 kD inner membrane protein | 0706 | 179 | .85 | 13.69 | 53.24 |
SecY | N | Â | subunit of translocase | 0201 | 82 | .86 | 8.00 | 58.78 |