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Table 7 Non-synonymous Changes on the 1A3/1A4 Branch

From: Phylogenomic approaches to common problems encountered in the analysis of low copy repeats: The sulfotransferase 1A gene family example

Site*

Nucleotide Changes/Site

Hominoid SULT1A Ancestor

 

Hominoid SULT1A3 Ancestor

  

Residue

PP†

Physicochemical Properties

 

Residue

PP

Physicochemical Properties

44

1

Ser

(1.00)

tiny polar

→

Asn

(1.00)

small polar

71

1

His

(0.99)

non-polar aromatic positive

→

Asn

(1.00)

small polar

76

1

Phe

(1.00)

non-polar aromatic

→

Tyr

(1.00)

aromatic

77

2

Met

(0.99)

non-polar

→

Val

(1.00)

small non-polar aliphatic

84

1

Phe

(1.00)

non-polar aromatic

→

Val

(1.00)

small non-polar aliphatic

85

1

Lys

(1.00)

Positive

→

Asn

(1.00)

small polar

86

2

Val

(0.98)

small non-polar aliphatic

→

Asp

(1.00)

small polar negative

89

3

Ile

(0.98)

non-polar aliphatic

→

Glu

(1.00)

polar negative

93

1

Met

(0.00)

non-polar

→

Leu

(1.00)

non-polar aliphatic

101

1

Ala

(1.00)

tiny non-polar

→

Pro

(1.00)

small

105

1

Leu

(1.00)

non-polar aliphatic

→

Ile

(1.00)

son-polar aliphatic

107

1

Thr

(1.00)

tiny polar

→

Ser

(1.00)

tiny polar

132

1

Ala

(1.00)

tiny non-polar

→

Pro

(1.00)

small

143

1

Tyr

(1.00)

aromatic

→

His

(1.00)

non-polar aromatic positive

144

2

His

(0.99)

non-polar aromatic positive

→

Arg

(1.00)

polar positive

146

2

Ala

(1.00)

tiny non-polar

→

Glu

(1.00)

polar negative

148

1

Val

(1.00)

small non-polar aliphatic

→

Ala

(1.00)

tiny non-polar

222

1

Leu

(0.99)

non-polar aliphatic

→

Phe

(1.00)

non-polar aromatic

  1. * Sites underlined were identified as being positively selected using the branch-site specific models. †Posterior probabilities that the ancestral residues are correct, conditional on the model of sequence evolution used.