Phylogenomic approaches to common problems encountered in the analysis of low copy repeats: The sulfotransferase 1A gene family example

Table 3 SULT1A4 and SULT1A3 Genomic Region Differences

Location*	Nucleotide	SULT1A4 Region	SULT1A3 Region
5' UTR	-6,246	G	C
5' UTR	-6,118	C	T
5' UTR	-6,007	G	C
5' UTR	-5,246	-	T
5' UTR	-4,433	-	T
Intron 1B	-2,775	C	T
Intron 1B	-2,671	-	T
Intron 1B	-2,670	-	T
Intron 1B	-2,594	T	G
Intron 1A	-91	-	A
Exon 2	+105	A	G
Intron 4	+853	-	A
Intron 4	+1,487	A	G
Exon 8	+3,569	-	A
Exon 8	+3,570	-	A
Exon 8	+3,571	-	T
Exon 8	+3,572	-	T
3' UTR	+5,379	G	C
3' UTR	+6,438	C	-
3' UTR	+6,335	C	-
3' UTR	+6,210	C	-

* 21 alignment positions are shown where the nucleotide/gapping (-) of the SULT1A4 region differed from that of the SULT1A3 region. Exon and intron names of the SULT1A3 gene are according to [33]. All nucleotides are numbered relative to the first nucleotide of the start codon, which has a value of +1. There was no position 'zero'. The last nucleotide of the coding sequence occurs at position +3,188. Approximately 3 kb of upstream (5' UTR) and downstream (3' UTR) nucleotides were included in the comparison.

ISSN: 2730-7182