Table 5 Nine primates Log-likelihoods (rounded to closest integer) of the MLEs for 15 rooted trees under the nonstationary (NONSTA), stationary (STA) and reversible (REV) models.
From: Rooting a phylogenetic tree with nonreversible substitution models
root placement | NONSTA | STA | REV |
|---|---|---|---|
human | -4960 | -4965 | -4965 |
chimp | -4959 | -4965 | -4965 |
gorilla | -4961 | -4965 | -4965 |
orangutan | -4961 | -4965 | -4965 |
gibbon | -4962 | -4964 | -4965 |
crab-eating macaque | -4955 | -4963 | -4965 |
squirrel monkey | -4941 | -4961 | -4965 |
tarsier | -4932 | -4963 | -4965 |
lemur | -4935 | -4961 | -4965 |
a | -4962 | -4965 | -4965 |
b | -4961 | -4965 | -4965 |
c | -4961 | -4964 | -4965 |
d | -4957 | -4964 | -4965 |
e | -4948 | -4963 | -4965 |
f | -4936 | -4963 | -4965 |