Table 4 Combined analysis Combined log likelihoods over all genes under the nonstationary (NONSTA), stationary (STA), and reversible (REV) models. If NONSTA or STA places the root correctly, the corresponding log likelihood appears in bold.
From: Rooting a phylogenetic tree with nonreversible substitution models
| group | root placement | NONSTA | STA | REV |
|---|---|---|---|---|
| human | -21536 | -21743 | -21765 | |
| 1 | chimp | -21551 | -21746 | -21765 |
| gorilla | -21470 | -21744 | -21765 | |
| human | -26266 | -26566 | -26589 | |
| 2 | chimp | -26270 | -26567 | -26589 |
| gorilla | -26223 | -26566 | -26589 | |
| orangutan | -26172 | -26566 | -26589 | |
| interior | -26241 | -26563 | -26589 | |
| human | -53049 | -53387 | -53427 | |
| mouse | -53029 | -53393 | -53427 | |
| 3 | chicken | -52848 | -53388 | -53427 |
| frog | -52682 | -53382 | -53427 | |
| interior | -52833 | -53391 | -53427 |