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Table 2 Comparison of promoter features in mammals and lower vertebrates

From: The architecture of mammalian ribosomal protein promoters

Gene

Species

Initiator

TATA

GABP

Sp1

YY1

Box A

AUG

Acc. No.

rpS3

Hs/Mm

TT C CTTTCCT

+

1

1

1

 

E1

AB061838, NM_012052

 

Xl

GC- C ------

+

†

 

1

 

E1

Z34530

 

Fr

C---------

+

 

†

1

 

E1

X97794

rpS6

Hs/Mm

SC C TCTTTTY

–

3

  

1

E1

X67309, D28348, Z54209

 

Xl

C --- C ---C-

–

    

E1

AF020551

rpS7

Hs/Mm

SY C TCTTYCT

+/– +

   

1

E2

Z25749, AB055774, NM_011300

 

Xl

- CC -------

–

   

1

E2

X71081

 

Fr

----------

+

   

1

E2

X94942

rpS15

Hs/Mm

WY C TYTTCYG

+/–

1

1

1

 

E1e

M32405, AB055776, NM_001018

 

Gg

C --C------

+/–

1

†

1

 

E1e

D10167

rpS24

Hs/Mm

TY C TCTTTTC

+

  

1

 

E1e

AB062069, U12202, NM_011297

 

Xl

----T C C--T

+

  

1

 

E1e

M33517

 

Fr

-----C---T

+/–

  

1

 

E1e

AJ001398

rpL5

Hs/Mm

GY C YTTTTCC

+

  

1

 

E1e

AB055762, NM_00969, mCG13589

 

Gg

-G- C ------

–

  

1

 

E1e

D10737

rpL7a

Hs/Mm

TT C TYTCTCC

+

 

2

1

1

E1e

X61923, X54067

 

Gg

G CCC --T-TA

+/–

  

1

1

E1e

X62641

 

Fr

-C------GC

+/–

    

E1e

Y15171

rpL14

Hs/Mm

YY C TTCTCGC

+/–

 

2

  

E1e

AB061822, mCG22708

 

Xl

-- C --T--T-

–

    

E1e

X06552

rpL18

Hs/Mm

ST C TTTCCGG

–

 

1

2

 

E1e

AB061825, mCG132477

 

Xl

TC C -----TC

+/–

 

†

1

 

E1e

X05025

 

Om

TC C ---T-CC

–

  

†

 

E1e

AF240376

rpL30

Hs/Mm

TT C CTTTCTC

–

2

 

1

 

E2

AB070559, K02928

 

Gg

C-- C -----G

–

  

1

 

E2

D14521

rpL37a

Hs/Mm

TC C TYTYYGG

+/–

1

   

E1e

NM_000998, NM_009084

 

Gg

-- C -----CT

+/–

1

   

E1e

D14167

  1. Hs/Mm: Homo sapiens/Mus musculus; Gg: Gallus gallus; Xl: Xenopus laevis; Fr: Fugu rubripes; Om: Oreochromis mossambicus (tilapia). For the initiator sequences, C represents an alleged tsp based on various types of experimental evidence. For the transcription factor binding sites, only those sites that are conserved (aligned) between human and mouse are listed. A † symbol indicates that the promoter contains an unaligned site for the factor. Designation of AUG locations as in Table 1.