Table 1 Evaluation of structure conservation. The table shows the percentage of output sequences that recognize correctly the LβH fold for local-score SCPE, global-score SCPE, and JTT for two different amounts of amino acid substitutions per site (Ka).
Amount of Divergence | ||
|---|---|---|
Model | Ka = 0.28 | Ka = 1.7 |
Local-score SCPE λ = 1.10, ω = 0.15 | 87% | 62% |
Local-score SCPE λ = 8.00, ω = 0.92 | 19% | 4% |
Global-score SCPE λ = 7.00, ω = 0.19 | 68% | 39% |
Global-score SCPE λ = 90.00, ω = 0.95 | 8% | 0% |
JTT | 20% | 0% |