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Table 6 Rational BDIM yielding the shortest mean time of family formation

From: Gene family evolution: an in-depth theoretical and simulation analysis of non-linear birth-death-innovation models

 

N

D

R(D)(N)

T (D) N

Sce

130

3.13

416.0

20.8

Dme

335

2.67

1131.0

56.55

Cel

662

2.44

2317.7

115.9

Ath

1535

2.65

5553.8

277.7

Hsa

1151

2.71

4079.5

204.

Tma

97

3.56

317.8

15.9

Mth

43

2.40

125.2

6.3

Sso

81

2.19

254.2

12.7

Bsu

124

2.05

404.4

20.

Eco

140

2.16

460.4

23.

  1. For each genome, D is the value of the model degree d , which results in the minimum of the mean time of formation of the largest family, T (d) N = R (d) ( N )/ r du (in Ga, under indicated value of d and r du = 2 × 10 -8 ) are shown. Species abbreviations: Sce, Saccharomyces cerevisiae , Dme, Drosophila melanogaster , Cel, Caenorhabditis elegans , Ath, Arabidopsis thaliana , Hsa, Homo sapiens , Tma, Thermotoga maritima , Mth, Methanothermobacter thermoautotrophicum , Sso, Sulfolobus solfataricus , Bsu, Bacillus subtilis , Eco, Escherichia coli .