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Table 2 Presence of DNA repair genes investigated in this work.

From: Different patterns of evolution for duplicated DNA repair genes in bacteria of the Xanthomonadales group

  Taxa Genesb
Organisms (Abbreviation)a   lex A lig rec A uvr A uvr B uvr C uvrD family
Aeropyrum pernix (AEROP) Archaea - 1 - - - - -
Archaeoglobus fulgidus (ARCFU) Archaea - 2 - - - - -
Halobacterium (HALOB) Archaea - 1 - 1 1 1 1
Methanobacterium thermoautotrophicum (METTH) Archaea - 1 - 1 1 1 2
Methanococcus jannaschii (METJA) Archaea - 1 - - - - -
Pyrococcus horikoshii (PYHOR) Archaea - 1 - - - - -
Sulfolobus solfataricus (SULFO) Archaea - 1 - - - - -
Mycobacterium tuberculosis H37 (MYCTU) Actinobacteria 1 4 1 1 1 1 3
Streptomyces coelicolor A3(2) (STRCO) Actinobacteria 1 5 1 4 1 1 4
Chlorobium tepidum TLS (CLORB) Chlorobi - 1 1 2 1 1 1
Bacillus subtilis (BACSU) Firmicutes 1 3 1 1 1 1 2
Clostridium acetobutylicum (CLOST) Firmicutes 1 2 1 2 1 2 2
Listeria innocua (LISTI) Firmicutes 1 1 1 3 1 2 1
Oceanobacillus iheyensis (OCENO) Firmicutes 1 2 1 2 1 1 1
Deinococcus radiodurans (DEIRA) Thermus/ Deinococcus 2 1 1 2 1 1 1
Thermotoga marítima (THEMA) Thermotogae 1 1 1 1 1 1 1
Synechocystis (SYNEC) Cyanobacteria 1 2 1 1 1 1 1
Agrobacterium tumefaciens Cereon (AGROB) Alpha proteobacteria 1 7 1 1 1 1 2
Caulobacter crescentus (CAULO) Alpha proteobacteria 1 2 1 1 1 1 2
Mesorhizobium loti (MESLO) Alpha proteobacteria 1 12 1 1 1 1 2
Sinorhizobium meliloti (RHIME) Alpha proteobacteria 1 10 1 1 1 1 2
Neisseria meningitidis Z2491 (NEIMA) Beta proteobacteria 1 1 1 1 1 1 1
Ralstonia solanacearum (RALST) Beta proteobacteria 1 1 1 2 1 1 2
Buchnera sp (BUCAI) Gamma proteobacteria - 1 - - - - -
Escherichia coli. (ECOLI) Gamma proteobacteria 1 1 1 1 1 2 1
Haemophilus influenzae (HAEIN) Gamma proteobacteria 1 1 1 1 1 1 1
Pseudomonas aeruginosa (PSEAE) Gamma proteobacteria 1 2 1 1 1 1 1
Salmonella typhimurium LT2 (SALTY) Gamma proteobacteria 1 1 1 1 1 2 1
Vibrio cholerae (VICHO) Gamma proteobacteria 1 2 1 1 1 1 1
Xanthomonas axonopodis pv citri (XANTH) Gamma proteobacteria 2 3 1 2 1 2 2
Xylella fastidiosa (XYFAS) Gamma proteobacteria 1 1 1 1 1 1 1
  1. a. The organisms are listed in alphabetic order within the taxa. b. The numbers indicate the amount of homologs.