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Table 2 Presence of DNA repair genes investigated in this work.

From: Different patterns of evolution for duplicated DNA repair genes in bacteria of the Xanthomonadales group

 

Taxa

Genesb

Organisms (Abbreviation)a

 

lex A

lig

rec A

uvr A

uvr B

uvr C

uvrD family

Aeropyrum pernix (AEROP)

Archaea

-

1

-

-

-

-

-

Archaeoglobus fulgidus (ARCFU)

Archaea

-

2

-

-

-

-

-

Halobacterium (HALOB)

Archaea

-

1

-

1

1

1

1

Methanobacterium thermoautotrophicum (METTH)

Archaea

-

1

-

1

1

1

2

Methanococcus jannaschii (METJA)

Archaea

-

1

-

-

-

-

-

Pyrococcus horikoshii (PYHOR)

Archaea

-

1

-

-

-

-

-

Sulfolobus solfataricus (SULFO)

Archaea

-

1

-

-

-

-

-

Mycobacterium tuberculosis H37 (MYCTU)

Actinobacteria

1

4

1

1

1

1

3

Streptomyces coelicolor A3(2) (STRCO)

Actinobacteria

1

5

1

4

1

1

4

Chlorobium tepidum TLS (CLORB)

Chlorobi

-

1

1

2

1

1

1

Bacillus subtilis (BACSU)

Firmicutes

1

3

1

1

1

1

2

Clostridium acetobutylicum (CLOST)

Firmicutes

1

2

1

2

1

2

2

Listeria innocua (LISTI)

Firmicutes

1

1

1

3

1

2

1

Oceanobacillus iheyensis (OCENO)

Firmicutes

1

2

1

2

1

1

1

Deinococcus radiodurans (DEIRA)

Thermus/ Deinococcus

2

1

1

2

1

1

1

Thermotoga marítima (THEMA)

Thermotogae

1

1

1

1

1

1

1

Synechocystis (SYNEC)

Cyanobacteria

1

2

1

1

1

1

1

Agrobacterium tumefaciens Cereon (AGROB)

Alpha proteobacteria

1

7

1

1

1

1

2

Caulobacter crescentus (CAULO)

Alpha proteobacteria

1

2

1

1

1

1

2

Mesorhizobium loti (MESLO)

Alpha proteobacteria

1

12

1

1

1

1

2

Sinorhizobium meliloti (RHIME)

Alpha proteobacteria

1

10

1

1

1

1

2

Neisseria meningitidis Z2491 (NEIMA)

Beta proteobacteria

1

1

1

1

1

1

1

Ralstonia solanacearum (RALST)

Beta proteobacteria

1

1

1

2

1

1

2

Buchnera sp (BUCAI)

Gamma proteobacteria

-

1

-

-

-

-

-

Escherichia coli. (ECOLI)

Gamma proteobacteria

1

1

1

1

1

2

1

Haemophilus influenzae (HAEIN)

Gamma proteobacteria

1

1

1

1

1

1

1

Pseudomonas aeruginosa (PSEAE)

Gamma proteobacteria

1

2

1

1

1

1

1

Salmonella typhimurium LT2 (SALTY)

Gamma proteobacteria

1

1

1

1

1

2

1

Vibrio cholerae (VICHO)

Gamma proteobacteria

1

2

1

1

1

1

1

Xanthomonas axonopodis pv citri (XANTH)

Gamma proteobacteria

2

3

1

2

1

2

2

Xylella fastidiosa (XYFAS)

Gamma proteobacteria

1

1

1

1

1

1

1

  1. a. The organisms are listed in alphabetic order within the taxa. b. The numbers indicate the amount of homologs.