Table 2 Frequencies of Fungal Nucleotides at Sites of Spliceosomal Intron Insertion
From: The exon context and distribution of Euascomycetes rRNA spliceosomal introns
Intron Position | Insertion Site | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
Ec | Sc | All | + Int | - Int | 5'-nt | 3'-nt | All | + Int | - Int | # Int |
265 | 336 | 99.8 | 100.0 | 99.8 | G | G | 95.0 | 85.7 | 95.3 | 4 |
297 | 369 | 65.3 | 97.8 | 63.9 | U | A | 100.0 | 100.0 | 99.5 | 5 |
298 | 370 | 100.0 | 100.0 | 99.5 | A | G | 100.0 | 100.0 | 100.0 | 2 |
299 | 371 | 100.0 | 100.0 | 100.0 | G | G | 99.8 | 100.0 | 99.8 | 12 |
300 | 372 | 99.8 | 100.0 | 99.8 | G | G | 99.7 | 100.0 | 99.6 | 1 |
330 | 402 | 99.1 | 100.0 | 99.1 | C | G | 99.5 | 100.0 | 99.4 | 15 |
331 | 403 | 99.5 | 100.0 | 99.4 | G | G | 99.7 | 100.0 | 99.7 | 8 |
332 | 404 | 99.7 | 100.0 | 99.7 | G | C | 99.6 | 100.0 | 99.6 | 1 |
333 | 405 | 99.6 | 100.0 | 99.6 | C | U | 91.5 | 100.0 | 91.1 | 1 |
337 | 409 | 76.7 | 87.0 | 76.3 | C | A | 99.8 | 100.0 | 99.8 | 1 |
390 | 461 | 99.3 | 97.5 | 99.4 | G | G | 93.1 | 100.0 | 92.9 | 2 |
393 | 464 | 99.6 | 100.0 | 99.6 | A | G | 99.6 | 100.0 | 99.5 | 10 |
400 | 471 | 99.6 | 100.0 | 99.6 | A | U | 97.6 | 95.0 | 97.7 | 1 |
514 | 561 | 99.5 | 100.0 | 99.4 | G | G | 99.5 | 100.0 | 99.4 | 1 |
674 | 885 | 99.7 | 100.0 | 99.7 | G | U | 99.8 | 100.0 | 99.8 | 4 |
882 | 1106 | 67.3 | 75.8 | 67.0 | U | G | 80.5 | 84.9 | 80.3 | 1 |
883 | 1107 | 80.5 | 84.9 | 80.3 | G | G | 99.4 | 100.0 | 99.4 | 6 |
939 | 1164 | 99.2 | 97.1 | 99.3 | G | G | 98.7 | 97.1 | 98.8 | 8 |
1057 | 1277 | 99.8 | 100.0 | 99.8 | G | G | 98.8 | 100.0 | 98.7 | 1 |
1071 | 1291 | 93.4 | 100.0 | 93.3 | G | G | 99.4 | 100.0 | 99.4 | 1 |
1083 | 1303 | 99.5 | 100.0 | 99.5 | U | G | 99.6 | 100.0 | 99.6 | 1 |
1226 | 1459 | 99.1 | 100.0 | 99.1 | C | A | 99.8 | 100.0 | 99.8 | 2 |
1229 | 1462 | 99.7 | 100.0 | 99.7 | G | C | 99.4 | 100.0 | 99.3 | 8 |
1514 | 1777 | 98.6 | 100.0 | 98.5 | G | G | 91.1 | 100.0 | 90.9 | 2 |
678 | 967 | 99.9 | 100.0 | 99.9 | G | A | 99.9 | 97.0 | 100.0 | 16 |
681 | 970 | 99.7 | 97.0 | 99.9 | G | G | 98.1 | 93.9 | 98.3 | 1 |
711 | 1000 | 99.6 | 97.0 | 99.7 | G | A | 98.2 | 81.8 | 99.0 | 3 |
775 | 1065 | 99.8 | 100.0 | 99.8 | G | G | 100.0 | 100.0 | 100.0 | 1 |
776 | 1066 | 100.0 | 100.0 | 100.0 | G | G | 100.0 | 100.0 | 100.0 | 5 |
777 | 1067 | 100.0 | 100.0 | 100.0 | G | G | 100.0 | 100.0 | 100.0 | 1 |
780 | 1070 | 100.0 | 100.0 | 100.0 | G | A | 100.0 | 100.0 | 100.0 | 1 |
783 | 1073 | 100.0 | 100.0 | 100.0 | A | G | 100.0 | 100.0 | 100.0 | 2 |
784 | 1074 | 100.0 | 100.0 | 100.0 | G | A | 100.0 | 100.0 | 100.0 | 3 |
786 | 1076 | 99.8 | 100.0 | 99.8 | C | U | 95.8 | 91.2 | 96.1 | 1 |
787 | 1077 | 95.8 | 91.2 | 96.1 | U | A | 98.7 | 91.2 | 99.1 | 1 |
824 | 1114 | 100.0 | 100.0 | 100.0 | U | C | 100.0 | 100.0 | 100.0 | 1 |
830 | 1120 | 99.8 | 100.0 | 99.8 | A | G | 99.8 | 100.0 | 99.8 | 1 |
858 | 1151 | 100.0 | 100.0 | 100.0 | G | G | 100.0 | 100.0 | 100.0 | 2 |
978 | 1306 | 99.3 | 95.7 | 99.6 | G | G | 100.0 | 100.0 | 100.0 | 3 |
1024 | 1351 | 98.6 | 100.0 | 98.5 | A | G | 99.3 | 100.0 | 99.3 | 1 |
1054 | 1387 | 97.6 | 100.0 | 97.4 | G | G | 100.0 | 100.0 | 100.0 | 4 |
1091 | 1424 | 100.0 | 100.0 | 100.0 | G | U | 99.3 | 100.0 | 99.2 | 1 |
1093 | 1426 | 100.0 | 100.0 | 100.0 | G | U | 100.0 | 100.0 | 100.0 | 1 |
1098 | 1431 | 100.0 | 100.0 | 100.0 | A | A | 99.3 | 100.0 | 99.2 | 1 |
1849 | 2367 | 100.0 | 100.0 | 100.0 | U | G | 100.0 | 100.0 | 100.0 | 1 |
1903 | 2404 | 97.3 | 100.0 | 97.1 | G | G | 100.0 | 100.0 | 100.0 | 1 |
1929 | 2430 | 97.3 | 100.0 | 97.1 | G | G | 97.3 | 100.0 | 97.1 | 1 |
2076 | 2576 | 100.0 | 100.0 | 100.0 | G | A | 100.0 | 100.0 | 100.0 | 1 |
2445 | 2972 | 100.0 | 100.0 | 100.0 | G | G | 100.0 | 100.0 | 100.0 | 1 |