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Table 1 Micobacterial genomes and genomic islands used in this study.

From: Role of the horizontal gene exchange in evolution of pathogenic Mycobacteria

Genome and NCBI accession

Number of genomic islands

Total number of genes in genomic islands

M. abscessus [NC_010397]

10

300

M. avium 104 [NC_008595]

20

538

M. avium ssp. paratuberculosis K-10 [NC_002944]

11

230

M. bovis AF2122/97 [NC_002945]

11

212

M. bovis BCG str. Pasteur 1173P2 [NC_008769]

10

187

M. bovis BCG str. Tokyo 172 [NC_012207]

11

209

M. canettii CIPT 140010059 [NC_015848]

11

194

M. leprae Br4923 [NC_011896]

22*

Not used

M. leprae TN [NC_002677]

23*

Not used

M. marinum M [NC_010612]

23

387

M. smegmatis MC2 155 [NC_008596]

12

329

M. tuberculosis CDC1551 [NC_002755]

10

203

M. tuberculosis F11 [NC_009565]

12

217

M. tuberculosis H37Ra [NC_009525]

12

225

M. tuberculosis H37Rv [NC_000962]

9

170

M. ulcerans Agy99 [NC_008611]

3

44

M. vanbaalenii PYR-1 [NC_008726]

16

360

Mycobacterium sp. JDM601 [NC_015576]

6

172

Mycobacterium sp. JLS [NC_009077]

14

430

Mycobacterium sp. KMS [NC_008705]

15

445

Mycobacterium sp. MCS [NC_008146]

12

356

Mycobacterium sp. Spyr1 [NC_014814]

14

419

  1. * These genomic islands were excluded from this study.