An empirical evaluation of two-stage species tree inference strategies using a multilocus dataset from North American pines

Table 2 Datasets

Dataset	Strategies that use the dataset	Number of strategies	Description
$D_{s}$	Concatenation or SMRT with ML, MP, or NJ	18	Consists of all 121 loci, with a single individual sampled from each of 11 species at each locus.
$D_{s, 0}$	STEAC, STAR, RTC, or MDC with ML, MP, or NJ	36	Subset of $D_{s}$ requiring that each locus has at least one sequence difference between each distinct pair of species, other than pairs from distinct outgroups.
$D_{p}$	Concatenation or SMRT with M	6	Consists of the full dataset , which contains all individuals and all loci.
$D_{p, 0}$	STEAC, STAR, RTC, or MDC with M	12	Subset of $D_{p}$ requiring that each locus has at least one sequence difference between each distinct pair of species, other than pairs from distinct outgroups.

ISSN: 2730-7182