The evolutionary history of holometabolous insects inferred from transcriptome-based phylogeny and comprehensive morphological data

Peters, Ralph S; Meusemann, Karen; Petersen, Malte; Mayer, Christoph; Wilbrandt, Jeanne; Ziesmann, Tanja; Donath, Alexander; Kjer, Karl M; Aspöck, Ulrike; Aspöck, Horst; Aberer, Andre; Stamatakis, Alexandros; Friedrich, Frank; Hünefeld, Frank; Niehuis, Oliver; Beutel, Rolf G; Misof, Bernhard

doi:10.1186/1471-2148-14-52

Table 3 FcLM Results

From: The evolutionary history of holometabolous insects inferred from transcriptome-based phylogeny and comprehensive morphological data

Dataset	Possible unambiguous topologies	No. of drawn quartets	Support T1 [%] 1,2 \| 3,4	Support T2 [%] 1,3 \| 2,4	Support T3 [%] 1,4 \| 2,3
Dataset 1 (complete dataset)	T1: Hymenoptera,outgroup taxa \| Mecopterida, Neuropteroidea	142,800	83	8	8
	T2: Hymenoptera, Mecopterida \| outgroup taxa, Neuropteroidea
	T3: Hymenoptera, Neuropteroidea \| outgroup taxa, Mecopterida
Dataset 2	T1: Neuropterida, Mecopterida \| Coleopterida, Hymenoptera	20,160	8	80	11
	T2: Neuropterida, Coleopterida \| Mecopterida, Hymenoptera
	T3: Neuropterida, Hymenoptera \| Mecopterida, Coleopterida
Dataset 3	T1: Raphidioptera, Corydalidae \| Sialidae, Neuroptera	1	0	0	100
	T2: Raphidioptera, Sialidae \| Corydalidae, Neuroptera
	T3: Raphidioptera, Neuroptera \| Corydalidae, Sialidae
Dataset 4	T1: Raphidioptera, Megaloptera \| Neuroptera, remaining holometabolans	134	25	1	72
	T2: Raphidioptera, Neuroptera \| Megaloptera, remaining holometabolans
	T3: Raphidioptera, remaining holometabolans \| Megaloptera, Neuroptera
Dataset 5	T1: Neuropterida,Strepsiptera \| Coleoptera,remaining holometabolans	1,220	6 (8)	55 (53)	38 (38)
	T2: Neuropterida, Coleoptera \| Strepsiptera,remaining holometabolans
	T3: Neuropterida,remaining holometabolans \| Strepsiptera, Coleoptera
Dataset 6a	T1: Antliophora, Amphiesmenoptera \| Coleopterida, remaining holometabolans	80,640	80	14	5
	T2: Antliophora, Coleopterida \| Amphiesmenoptera, remaining holometabolans
	T3: Antliophora, remaining holometabolans \| Amphiesmenoptera, Coleopterida
Dataset 6b	T1: Antliophora, Amphiesmenoptera \| Coleopterida, remaining holometabolans	57,600	79	15	5
	T2: Antliophora, Coleopterida \| Amphiesmenoptera, remaining holometabolans
	T3: Antliophora, remaining holometabolans \| Amphiesmenoptera, Coleopterida
Dataset 7	T1: Diptera, Siphonaptera \| Mecoptera, remaining holometabolans	1,034	0	0	100
	T2: Diptera, Mecoptera \| Siphonaptera, remaining holometabolans
	T3: Diptera, remaining holometabolans \| Siphonaptera, Mecoptera

For the four groups (clusters) that were selected for each of the seven datasets, three unambiguous topologies are possible (see Additional file 4, Chapter 3, and Additional file 3: Figure S16). For details which species are included in the groups for each dataset see Additional file 12. The number of drawn quartets is the product of the numbers of species in each group. In bold print: Topology that gained the highest support (support [%]: relative amount of quartets which show predominant support for either T₁, T₂ or T₃). Results of partitioned analyses of dataset 5 in parentheses.

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