Table 3 Summary of selected similarities and conflicts between bootstrap consensus topologies derived from the four data sets
Taxon | ntAll | ntNo3rd | RY | AA |
|---|---|---|---|---|
Amborellales | sister to all other Angiospermae (100%/100%) | sister to all other Angiospermae (100%/81% ) | sister to all other Angiospermae (100%/100%) | sister to all other Angiospermae (100%/70%) |
Anthocerotophyta | sister to Tracheophyta (100%/100%) | sister to Tracheophyta (94%/100%) | sister to Tracheophyta (95%/100%) | sister to Tracheophyta (53%/90%) |
Ceratophyllales | sister to Eudicotyledoneae (52%/100%) | sister to Monocotyledoneae + Eudicotyledoneae (52%/54%) | sister to Eudicotyledoneae (75%/100%) | sister to Piperales (67%) |
COM clade | within Fabidae (100%) | within Fabidae (70%) | within Fabidae (99%) | sister to a clade including Cucurbitales, Rosales, Fabales, Fagales (69%/100%; Fabidae not monophyletic) |
Dilleniales | sister to Superrosidae (95%/100%) | sister to Superrosidae (77%/100%) | sister to Superrosidae (57%/100%) | sister to Superasteridae (70%/66%) |
Ginkgoales | sister to Cycadales (98%/100%) | sister to Cycadales (100%/100%) | sister to Cycadales (51%/100%) | sister to Cycadales (100%/100%) |
Gnetophyta | sister to Cupressales + Araucariales (100%/100%) | sister to Cupressales + Araucariales (100%/100%) | sister to Cupressales + Araucariales (87%/100%) | sister to Cupressales + Araucariales (100%/100%) |
Marchantiophyta | sister to all other Embryophyta (100%/69%) | sister to Bryophyta (78%/100%) | sister to all other Embryophyta (100%/89%) | sister to Bryophyta (99%/100%) |
Monilophyta | sister to Lycopodiophyta + Spermatophyta (100%/75%) | sister to Spermatophyta (93%/100%) | sister to Spermatophyta (100%/100%) | sister to Spermatophyta (89%/100%) |
Prasinophyceae | not monophyletic; Nephroselmis sister to all other Chlorophyta (100%/87%) | not monophyletic; Nephroselmis sister to all other Chlorophyta (100%/78%) | not monophyletic; Nephroselmis sister to all other Chlorophyta (100%/92%) | not monophyletic; Nephroselmis sister to all other Chlorophyta (100%/96%) |
Zygnematophyceae | sister to Embryophyta (97%/100%) | sister to Embryophyta (99%/100%) | sister to Embryophyta (86%/100%) | sister to Embryophyta (93%/100%) |