Enzyme name | Species | CAI | ENc | GC3S | FOP | Highest RSCU |
|---|
IPCS |
L.major
| 0.604 | 50.34 | 0.72 | 0.362 | UUG (Leu) |
L.donovani
| 0.623 | 48.61 | 0.70 | 0.385 | CGC (Arg) |
L.braziliensis
| 0.573 | 48.21 | 0.69 | 0.394 | CGC (Arg) |
SPL |
L.major
| 0.681 | 44.22 | 0.78 | 0.39 | CUG (Leu) |
L.infactum
| 0.685 | 43.26 | 0.80 | 0.37 | CGC (Arg) |
SPT-1 |
L.major
| 0.694 | 46.45 | 0.77 | 0.323 | CUG (Leu) |
SPT-2 |
L.major
| 0.720 | 40.29 | 0.83 | 0.373 | GUU (Val) |
- RSCU (Relative synonymous codon usage was calculated to estimate the number of cotton under codon usage bias. CUB indices calculate are a) CAI – Codon adaptability index b) ENc – Effective number of codons c) GC3S – GC content at third synonymous position d) FOP – Frequency of optimized codons. A comparison of these indices between Leishmania and other homologous species is made. Range of indices between homologous species is given in the brackets. IPCS, SPT and SPL genes of Leishmania experience higher codon usage bias as compared to their homologues.
