Table 2 Mean of Robinson-Foulds distance with QFIT and global ML and NJ (variance shown in parentheses), 600 bp
From: EM for phylogenetic topology reconstruction on nonhomogeneous data
Mean Robinson-Foulds distance with QFIT, 600 bp | |||||
|---|---|---|---|---|---|
Top. | Method | b | |||
0.005 | 0.015 | 0.05 | 0.1 | ||
cc | NJ | 1.05 (2.22) | 0.67 (1.31) | 8.12 (8.44) | 12.97 (2.55) |
ML | 4.68 (0.90) | 4.36 (0.98) | 4.37 (0.80) | 5.31 (2.03) | |
EMtree | 4.58 (0.98) | 4.21 (0.38) | 4.25 (0.44) | 4.66 (1.09) | |
cd | NJ | 4.60 (1.41) | 4.47 (1.11) | 9.53 (5.68) | 11.56 (2.46) |
ML | 6.43 (0.88) | 6.21 (0.37) | 6.28 (0.48) | 6.92 (1.18) | |
EMtree | 6.41 (0.98) | 6.11 (0.21) | 6.20 (0.36) | 6.51 (0.76) | |
dd | NJ | 7.93 (1.11) | 8.41 (1.16) | 10.23 (2.51) | 9.96 (2.89) |
ML | 8.17 (0.74) | 8.15 (0.27) | 8.11 (0.20) | 8.75 (1.14) | |
EMtree | 8.14 (0.63) | 8.05 (0.11) | 8.06 (0.11) | 8.44 (0.68) | |