Figure 5
From: EM for phylogenetic topology reconstruction on nonhomogeneous data
Results of QuartetSuite (quartet-based method) with alignment length equal to 600. Results of QuartetSuite (quartet-based method) for different topologies and different input methods on alignments of length 600. The first three rows correspond to different methods of obtaining the quartets: NJ (a), ML (b), EMtree (c), and the two bottom rows correspond to global methods: (d) global ML (estimating homogeneous continuous-time K81 model), (e) global NJ (with K81 distances). Columns correspond to the three different 12-taxon topologies simulated: cc (left), cd (middle), dd (right).