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Table 1 Identification of the PAL gene family from the Phytozome database in this study

From: Molecular evolution and functional characterisation of an ancient phenylalanine ammonia-lyase gene (NnPAL1) from Nelumbo nucifera: novel insight into the evolution of the PAL family in angiosperms

Species

PAL seq ID

Bryophyta

  Physcomitrella patens (10)

Pp1s22_3V6.1 Pp1s32_311V6.1 Pp1s36_253V6.1 Pp1s5_197V6.1 Pp1s20_305V6.1 Pp1s494_3V6.1 Pp1s500_4V6.1 Pp1s43_88V6.1 Pp1s43_67V6.1 Pp1s52_44V6.1

Gymnosperm

  Pinus taeda (5)

Pteda1143311 Pteda17307 Pteda9006 Pteda28316 Pteda34319

Monocotyledons

  Brachypodium distachyon(6)

Bradi5g15830.1 Bradi3g48840.1 Bradi3g47120.1 Bradi3g49260.1 Bradi3g49270.1 Bradi3g49250.2

  Oryza sativa (9)

Os02g41630.2 Os02g41650.1 Os02g41670.1 Os02g41680.1 Os04g43760.1 Os04g43800.1 Os05g35290.1 Os11g48110.1 Os12g33610.1

  Sorghum bicolor(6)

Sb04g026520.1 Sb04g026560.1 Sb04g026510.1 Sb06g022740.1 Sb06g022750.1 Sb01g014020.1

  Setaria italica (6)

Si016478m Si016504m Si016467m Si009345m Si009509m Si012256m

  Zea mays (11)

GRMZM2G441347_T01 GRMZM2G118345_T01 GRMZM2G447436_T01 GRMZM2G063917_T01 GRMZM2G160541_T01 GRMZM2G081582_T01 GRMZM2G326335_T01 GRMZM2G334660_T01 GRMZM2G170692_T01 GRMZM2G074604_T01 GRMZM2G029048_T01

Dicotyledons

  Nelumbo nucifera (3)

NnPAL1 NnPAL2 NnPAL3

  Aquilegia coerulea (2)

Aquca_030_00132.1 Aquca_087_00007.1

  Arabidopsis thaliana (4)

AT2G37040.1(AtPAL1) AT3G53260.1 (AtPAL2) AT5G04230.2 (AtPAL3) AT3G10340.1 (AtPAL4)

  Cucumis sativus (8)

Cucsa.124460.1 Cucsa.124480.1 Cucsa.124470.1 Cucsa.124500.1 Cucsa.124490.1 Cucsa.385970.1 Cucsa.124510.1 Cucsa.137590.1

  Glycine max (5)

Glyma13g20800.1 Glyma03g33880.1 Glyma02g47940.1 Glyma20g32135.1 Glyma10g35381.1

  Mimulus guttatus (3)

mgv1a001582m mgv1a019971m mgv1a002104m

  Populus trichocarpa (4)

Potri.010G224200.1 Potri.010G224100.1 Potri.006G126800.1 Potri.008G038200.1

  Vitis vinifera (10)

GSVIVT01024306001 GSVIVT01016257001 GSVIVT01024292001 GSVIVT01025214001 GSVIVT01024294001 GSVIVT01024305001 GSVIVT01024315001 GSVIVT01025703001 GSVIVT01024295001 GSVIVT01024293001

  1. Note: The PAL gene family identified from one Bryophyta (Physcomitrella patens), one gymnosperm (Pinus taeda), five monocotyledons (Brachypodium distachyon, Oryza sativa, Sorghum bicolor, Setaria italica, Zea mays) and eight dicotyledons (Nelumbo nucifera, Aquilegia caerulea, Arabidopsis thaliana, Cucumis sativus, Glycine max, Mimulus guttatus, Populus trichocarpa, Vitis vinifera).
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BMC Ecology and Evolution

ISSN: 2730-7182

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