TY - JOUR AU - Yang, J. AU - Kalhan, S. C. AU - Hanson, R. W. PY - 2009 DA - 2009// TI - What is the metabolic role of phosphoenolpyruvate carboxykinase? JO - J Biol Chem VL - 284 UR - https://doi.org/10.1074/jbc.R109.040543 DO - 10.1074/jbc.R109.040543 ID - Yang2009 ER - TY - BOOK AU - Hochachka, P. W. AU - Somero, G. N. PY - 1984 DA - 1984// TI - Biochemical adaptation PB - Princeton University Press CY - New Jersey UR - https://doi.org/10.1515/9781400855414 DO - 10.1515/9781400855414 ID - Hochachka1984 ER - TY - JOUR AU - Hakimi, P. AU - Yang, J. AU - Casadesus, G. AU - Massillon, D. AU - Tolentino-Silva, F. AU - Nye, C. K. AU - Cabrera, M. E. AU - Hagen, D. R. AU - Utter, C. B. AU - Baghdy, Y. AU - Johnson, D. H. AU - Wilson, D. L. AU - Kirwan, J. P. AU - Kalhan, S. C. AU - Hanson, R. W. PY - 2007 DA - 2007// TI - Overexpression of the cytosolic form of phosphenolpyruvate carboxykinase (GTP) in skeletal muscle repatterns energy metabolism in the mouse JO - J Biol Chem VL - 282 UR - https://doi.org/10.1074/jbc.M706127200 DO - 10.1074/jbc.M706127200 ID - Hakimi2007 ER - TY - JOUR AU - Wheat, C. W. AU - Watt, W. B. AU - Pollock, D. D. AU - Schulte, P. M. PY - 2006 DA - 2006// TI - From DNA to fitness differences: sequences and structures of adaptive variants of Colias phosphoglucose isomerase (PGI) JO - Mol Biol Evol VL - 23 UR - https://doi.org/10.1093/molbev/msj062 DO - 10.1093/molbev/msj062 ID - Wheat2006 ER - TY - JOUR AU - Wang, B. AU - Watt, W. B. AU - Aakre, C. AU - Hawthorne, N. PY - 2009 DA - 2009// TI - Emergence of complex haplotypes from microevolutionary variation in sequence and structure of Colias phosphoglucose isomerase JO - J Mol Evol VL - 68 UR - https://doi.org/10.1007/s00239-009-9237-2 DO - 10.1007/s00239-009-9237-2 ID - Wang2009 ER - TY - JOUR AU - Papanicolaou, A. AU - Gebauer-Jung, S. AU - Blaxter, M. L. AU - McMillan, W. O. AU - Jiggins, C. D. PY - 2008 DA - 2008// TI - ButterflyBase: a platform for lepidopteran genomics JO - Nucl Acids Res VL - 36 UR - https://doi.org/10.1093/nar/gkm853 DO - 10.1093/nar/gkm853 ID - Papanicolaou2008 ER - TY - BOOK AU - Hall, T. PY - 2004 DA - 2004// TI - BioEdit: biological sequence alignment editor ID - Hall2004 ER - TY - JOUR AU - Librado, P. AU - Rozas, J. PY - 2009 DA - 2009// TI - DnaSP v5: a software for comprehensive analysis of DNA polymorphism data JO - Bioinformatics VL - 25 UR - https://doi.org/10.1093/bioinformatics/btp187 DO - 10.1093/bioinformatics/btp187 ID - Librado2009 ER - TY - JOUR AU - Stephens, M. AU - Donelly, P. PY - 2003 DA - 2003// TI - A comparison of Bayesian methods for haplotype reconstruction from population genotype data JO - Amer Journ Hum Genet VL - 73 UR - https://doi.org/10.1086/379378 DO - 10.1086/379378 ID - Stephens2003 ER - TY - JOUR AU - Stephens, M. AU - Smith, N. AU - Donelly, P. PY - 2001 DA - 2001// TI - A new statistical method for haplotype reconstruction from population data JO - Amer Journ Hum Genet VL - 68 UR - https://doi.org/10.1086/319501 DO - 10.1086/319501 ID - Stephens2001 ER - TY - JOUR AU - Duan, J. AU - Li, R. AU - Cheng, D. AU - Fan, W. AU - Zhu, X. AU - Chang, T. AU - Wu, Y. AU - Wang, J. AU - Mita, K. AU - Xiang, Z. AU - Xia, Q. PY - 2010 DA - 2010// TI - SilkDB 2.0: a platform for silkworm (Bombyx mori) genome biology JO - Nucl Acids Res VL - 38 UR - https://doi.org/10.1093/nar/gkp801 DO - 10.1093/nar/gkp801 ID - Duan2010 ER - TY - JOUR AU - McQuilton, P. AU - St Pierre, S. E. AU - Thurmond, J. PY - 2012 DA - 2012// TI - FlyBase 101 – the basics of navigating FlyBase JO - Nucl Acids Res VL - 40 UR - https://doi.org/10.1093/nar/gkr1030 DO - 10.1093/nar/gkr1030 ID - McQuilton2012 ER - TY - JOUR AU - Benson, D. A. AU - Karsch-Mizrachi, I. AU - Lipman, D. J. AU - Ostell, J. AU - Sayers, E. W. PY - 2011 DA - 2011// TI - GenBank JO - Nucl Acids Res VL - 39 UR - https://doi.org/10.1093/nar/gkq1079 DO - 10.1093/nar/gkq1079 ID - Benson2011 ER - TY - JOUR AU - Emanuelsson, O. AU - Brunak, S. AU - von Heijne, G. AU - Nielsen, H. PY - 2007 DA - 2007// TI - Locating proteins in the cell using TargetP, SignalP and related tools JO - Nature Protocols VL - 2 UR - https://doi.org/10.1038/nprot.2007.131 DO - 10.1038/nprot.2007.131 ID - Emanuelsson2007 ER - TY - JOUR AU - Guindon, S. AU - Gascuel, O. PY - 2003 DA - 2003// TI - A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood JO - Syst Biol VL - 52 UR - https://doi.org/10.1080/10635150390235520 DO - 10.1080/10635150390235520 ID - Guindon2003 ER - TY - BOOK AU - Felsenstein, J. PY - 2005 DA - 2005// TI - PHYLogeny Inference Package, v.3.63 ID - Felsenstein2005 ER - TY - JOUR AU - Ginalski, K. AU - Elofsson, A. AU - Fischer, D. AU - Rychlewski, L. PY - 2003 DA - 2003// TI - 3D-Jury: a simple approach to improve protein structure predictions JO - Bioinformatics VL - 19 UR - https://doi.org/10.1093/bioinformatics/btg124 DO - 10.1093/bioinformatics/btg124 ID - Ginalski2003 ER - TY - JOUR AU - Berman, H. M. AU - Westbrook, J. AU - Feng, Z. AU - Gilliland, G. AU - Bhat, T. N. AU - Weissig, H. AU - Shindyalov, I. N. AU - Bourne, P. E. PY - 2000 DA - 2000// TI - The Protein Data Bank JO - Nucl Acids Res VL - 28 UR - https://doi.org/10.1093/nar/28.1.235 DO - 10.1093/nar/28.1.235 ID - Berman2000 ER - TY - JOUR AU - Eswar, N. AU - Webb, B. AU - Marti-Renom, M. A. AU - Madhusudhan, M. S. AU - Earmian, D. AU - Shen, M. AU - Pieper, U. AU - Sali, A. PY - 2006 DA - 2006// TI - Comparative protein structure modelling using Modeller JO - Curr Prot Bioinform VL - 5.6 ID - Eswar2006 ER - TY - JOUR AU - Schwede, T. AU - Kopp, J. AU - Guex, N. AU - Peitsch, M. C. PY - 2003 DA - 2003// TI - SWISS-MODEL: an automated protein homology-modelling server JO - Nucl Acids Res VL - 31 UR - https://doi.org/10.1093/nar/gkg520 DO - 10.1093/nar/gkg520 ID - Schwede2003 ER - TY - JOUR AU - Aich, S. AU - Delbaere, L. T. J. PY - 2007 DA - 2007// TI - Phylogenetic study of the evolution of PEP-carboxykinase JO - Evol Bioinform VL - 3 ID - Aich2007 ER - TY - JOUR AU - Steinke, D. AU - Hoegg, S. AU - Brinkmann, H. AU - Meyer, A. PY - 2006 DA - 2006// TI - Three rounds (1R/2R/3R) of genome duplications and the evolution of the glycolytic pathway in vertebrates JO - BMC Biology VL - 4 UR - https://doi.org/10.1186/1741-7007-4-16 DO - 10.1186/1741-7007-4-16 ID - Steinke2006 ER - TY - JOUR AU - Roise, D. AU - Schatz, G. PY - 1988 DA - 1988// TI - Mitochondrial presequences JO - J Biol Chem VL - 268 ID - Roise1988 ER - TY - JOUR AU - Moriyama, E. N. AU - Powell, J. R. PY - 1996 DA - 1996// TI - Intraspecific nuclear DNA polymorphism in Drosophila JO - Mol Biol Evol VL - 13 UR - https://doi.org/10.1093/oxfordjournals.molbev.a025563 DO - 10.1093/oxfordjournals.molbev.a025563 ID - Moriyama1996 ER - TY - JOUR AU - Hudson, R. R. AU - Kaplan, N. L. PY - 1985 DA - 1985// TI - Statistical properties of the number of recombination events in the history of a sample of DNA sequences JO - Genetics VL - 111 ID - Hudson1985 ER - TY - BOOK AU - Goldstein, A. PY - 1964 DA - 1964// TI - Biostatistics PB - Macmillan CY - New York ID - Goldstein1964 ER - TY - BOOK AU - Sokal, R. R. AU - Rohlf, F. J. PY - 1995 DA - 1995// TI - Biometry PB - W.H. Freeman CY - New York ID - Sokal1995 ER - TY - JOUR AU - Watterson, G. A. PY - 1975 DA - 1975// TI - On the number of segregating sites in genetical models without recombination JO - Theor Pop Biol VL - 10 UR - https://doi.org/10.1016/0040-5809(75)90020-9 DO - 10.1016/0040-5809(75)90020-9 ID - Watterson1975 ER - TY - BOOK AU - Kimura, M. AU - Ohta, T. PY - 1971 DA - 1971// TI - Theoretical aspects of population genetics PB - Princeton University Press CY - Princeton NJ ID - Kimura1971 ER - TY - JOUR AU - Holyoak, T. AU - Sullivan, S. M. AU - Nowak, T. PY - 2006 DA - 2006// TI - Structural insights into the mechanism of PEPCK catalysis JO - Biochemistry VL - 45 UR - https://doi.org/10.1021/bi060269g DO - 10.1021/bi060269g ID - Holyoak2006 ER - TY - JOUR AU - Sullivan, S. M. AU - Holyoak, T. PY - 2007 DA - 2007// TI - Structure of rat cytosolic PEPCK: insight into the mechanism of phosphorylation and decarboxylation of oxaloacetic acid JO - Biochemistry VL - 46 UR - https://doi.org/10.1021/bi701038x DO - 10.1021/bi701038x ID - Sullivan2007 ER - TY - JOUR AU - Carlson, G. M. AU - Holyoak, T. PY - 2009 DA - 2009// TI - Structural insights into the mechanism of PEPCK catalysis JO - J Biol Chem VL - 284 UR - https://doi.org/10.1074/jbc.R109.040568 DO - 10.1074/jbc.R109.040568 ID - Carlson2009 ER - TY - JOUR AU - Li, A. AU - Nussinov, R. PY - 1998 DA - 1998// TI - A set of van der Waals and Coulombic radii of protein atoms for molecular and solvent-accessible surface calculation, packing evaluation, and docking JO - Proteins VL - 32 UR - https://doi.org/3.0.CO;2-H DO - 3.0.CO;2-H ID - Li1998 ER - TY - JOUR AU - Aé, S. A. PY - 1959 DA - 1959// TI - A study of hybrids in Colias (Lepidoptera, Pieridae) JO - Evolution VL - 13 UR - https://doi.org/10.2307/2405945 DO - 10.2307/2405945 ID - Aé1959 ER - TY - JOUR AU - Wheat, C. W. AU - Watt, W. B. PY - 2008 DA - 2008// TI - A mitochondrial-DNA-based phylogeny for some evolutionary-genetic model species of Colias butterflies JO - Mol Phylog Evol VL - 47 UR - https://doi.org/10.1016/j.ympev.2008.03.013 DO - 10.1016/j.ympev.2008.03.013 ID - Wheat2008 ER - TY - JOUR AU - Hudson, R. R. PY - 2002 DA - 2002// TI - Generating samples under a Wright-Fisher neutral model of genetic variation JO - Bioinformatics VL - 18 UR - https://doi.org/10.1093/bioinformatics/18.2.337 DO - 10.1093/bioinformatics/18.2.337 ID - Hudson2002 ER - TY - BOOK AU - Klots, A. B. PY - 1951 DA - 1951// TI - A field guide to the butterflies of North America, east of the Great Plains PB - Houghton Mifflin CY - New York ID - Klots1951 ER - TY - CHAP AU - Wang, B. PY - 2005 DA - 2005// TI - Ph.D. thesis, University of Massachusetts at Amherst BT - Introgression and genomic differentiation in sympatric hybridizing Colias butterflies PB - University Microfilms CY - Ann Arbor, MI ID - Wang2005 ER - TY - CHAP AU - Watt, W. B. ED - Singh, R. ED - Uyenoyama, M. PY - 2004 DA - 2004// TI - Adaptation, constraint, and neutrality: mechanistic case studies with butterflies and their general implications BT - The evolution of population biology PB - Cambridge University Press CY - Cambridge, UK UR - https://doi.org/10.1017/CBO9780511542619.017 DO - 10.1017/CBO9780511542619.017 ID - Watt2004 ER - TY - JOUR AU - Wheat, C. W. AU - Watt, W. B. AU - Boutwell, C. L. PY - 2005 DA - 2005// TI - A reconnaissance of population genetic variation in arctic and subarctic sulfur butterflies (Colias: Lepidoptera, Pieridae) JO - Canad J Zool VL - 83 UR - https://doi.org/10.1139/z05-159 DO - 10.1139/z05-159 ID - Wheat2005 ER - TY - JOUR AU - Watt, W. B. AU - Donohue, K. AU - Carter, P. A. PY - 1996 DA - 1996// TI - Adaptation at specific loci. VI. Divergence vs. parallelism of polymorphic allozymes in molecular function and fitness-component effects among Colias species (Lepidoptera, Pieridae) JO - Mol Biol Evol VL - 13 UR - https://doi.org/10.1093/oxfordjournals.molbev.a025631 DO - 10.1093/oxfordjournals.molbev.a025631 ID - Watt1996 ER - TY - JOUR AU - Watt, W. B. AU - Dean, A. M. PY - 2000 DA - 2000// TI - Molecular-functional studies of adaptive genetic variation in prokaryotes and eukaryotes JO - Annu Rev Genet VL - 34 UR - https://doi.org/10.1146/annurev.genet.34.1.593 DO - 10.1146/annurev.genet.34.1.593 ID - Watt2000 ER - TY - BOOK AU - Dobzhansky, T. PY - 1970 DA - 1970// TI - Genetics of the evolutionary process PB - Columbia University Press CY - New York ID - Dobzhansky1970 ER - TY - JOUR AU - Tian, D. AU - Araki, H. AU - Stahl, E. AU - Bergelson, J. AU - Kreitman, M. PY - 2002 DA - 2002// TI - Signature of balancing selection in Arabidopsis JO - Proc Nat’l Acad Sci USA VL - 99 UR - https://doi.org/10.1073/pnas.172203599 DO - 10.1073/pnas.172203599 ID - Tian2002 ER - TY - JOUR AU - Hughes, A. L. AU - Nei, M. PY - 1992 DA - 1992// TI - Maintenance of MHC polymorphism JO - Nature VL - 355 UR - https://doi.org/10.1038/355402b0 DO - 10.1038/355402b0 ID - Hughes1992 ER - TY - CHAP AU - Hedrick, P. W. AU - Kim, T. J. ED - Singh, R. S. ED - Krimbas, C. B. PY - 2000 DA - 2000// TI - Genetics of complex polymorphisms: parasites and maintenance of the major histocompatibility complex variation BT - Evolutionary genetics: from molecules to morphology PB - Cambridge University Press CY - Cambridge, UK ID - Hedrick2000 ER - TY - CHAP AU - Uyenoyama, M. AU - Takebayashi, N. ED - Singh, R. ED - Uyenoyama, M. PY - 2004 DA - 2004// TI - Genus-specific diversification of mating types BT - The evolution of population biology PB - Cambridge University Press CY - Cambridge, UK UR - https://doi.org/10.1017/CBO9780511542619.016 DO - 10.1017/CBO9780511542619.016 ID - Uyenoyama2004 ER - TY - JOUR AU - Carter, P. A. AU - Watt, W. B. PY - 1988 DA - 1988// TI - Adaptation at specific loci. V. Metabolically adjacent enzyme loci may have very distinct experiences of selective pressures JO - Genetics VL - 119 ID - Carter1988 ER - TY - JOUR AU - Verrelli, B. C. AU - Eanes, W. F. PY - 2001 DA - 2001// TI - Clinal variation for amino acid polymorphisms at the Pgm locus in Drosophila melanogaster JO - Genetics VL - 157 ID - Verrelli2001 ER - TY - JOUR AU - Verrelli, B. C. AU - Eanes, W. F. PY - 2001 DA - 2001// TI - The functional impact of PGM amino acid polymorphism on glycogen content in Drosophila melanogaster JO - Genetics VL - 159 ID - Verrelli2001 ER - TY - JOUR AU - Schuster, S. AU - Fell, D. A. AU - Dandekar, T. PY - 2000 DA - 2000// TI - A general definition of metabolic pathways useful for systematic organization and analysis of complex metabolic networks JO - Nature Biotech VL - 18 UR - https://doi.org/10.1038/73786 DO - 10.1038/73786 ID - Schuster2000 ER - TY - JOUR AU - Kaplan, R. S. AU - Mayer, J. A. AU - Wolff, D. O. PY - 1993 DA - 1993// TI - The mitochondrial tricarboxylate transport protein JO - J Biol Chem VL - 268 ID - Kaplan1993 ER - TY - JOUR AU - Friedlander, T. P. AU - Regier, J. C. AU - Mitter, C. AU - Wagner, D. L. PY - 1996 DA - 1996// TI - A nuclear gene for higher level phylogenetics: phosphoenolpyruvate carboxykinase tracks Mesozoic-age divergences within Lepidoptera (Insecta) JO - Mol Biol Evol VL - 13 UR - https://doi.org/10.1093/oxfordjournals.molbev.a025619 DO - 10.1093/oxfordjournals.molbev.a025619 ID - Friedlander1996 ER - TY - JOUR AU - Sella, G. AU - Petrov, D. A. AU - Przeworski, M. AU - Andolfatto, P. PY - 2009 DA - 2009// TI - Pervasive natural selection in the Drosophila genome? JO - PLoS Genet VL - 5 UR - https://doi.org/10.1371/journal.pgen.1000495 DO - 10.1371/journal.pgen.1000495 ID - Sella2009 ER - TY - JOUR AU - Chakravarti, A. PY - 2011 DA - 2011// TI - Genomics is not enough JO - Science VL - 344 UR - https://doi.org/10.1126/science.1214458 DO - 10.1126/science.1214458 ID - Chakravarti2011 ER - TY - JOUR AU - Karasov, T. AU - Messer, P. W. AU - Petrov, D. A. PY - 2010 DA - 2010// TI - Evidence that adaptation in Drosophila is not limited by mutation at single sites JO - PLoS Genet VL - 6 UR - https://doi.org/10.1371/journal.pgen.1000924 DO - 10.1371/journal.pgen.1000924 ID - Karasov2010 ER - TY - JOUR AU - Suhre, K. AU - Shin, S. AU - Petersen, A. AU - Mohney, R. P. AU - Meredith, D. AU - Wigele, B. AU - Altmaier, E. AU - Deloukas, P. AU - Erdmann, J. AU - Grundberg, E. AU - Hammond, C. J. AU - de Angelis, M. H. AU - Kastenmuller, G. AU - Kottgen, A. AU - Kronenberg, F. AU - Mangino, M. AU - Meisinger, C. AU - Meitinger, T. AU - Mewes, H. AU - Milburn, M. V. AU - Prehn, C. AU - Raffler, J. AU - Ried, J. S. AU - Romisch-Margl, W. AU - Samani, N. J. AU - Small, K. S. AU - Wichmann, H. AU - Zhai, G. AU - Illig, T. PY - 2011 DA - 2011// TI - Human metabolic individuality in biomedical and pharmaceutical research JO - Nature VL - 477 UR - https://doi.org/10.1038/nature10354 DO - 10.1038/nature10354 ID - Suhre2011 ER - TY - JOUR AU - Anderson, J. T. AU - Willis, J. H. AU - Mitchell-Olds, T. PY - 2011 DA - 2011// TI - Evolutionary genetics of plant adaptation JO - Trends Genet VL - 27 UR - https://doi.org/10.1016/j.tig.2011.04.001 DO - 10.1016/j.tig.2011.04.001 ID - Anderson2011 ER - TY - BOOK AU - Whitehead, A. N. PY - 1929 DA - 1929// TI - The aims of education PB - Macmillan CY - New York ID - Whitehead1929 ER - TY - BOOK AU - Judson, H. F. PY - 1996 DA - 1996// TI - The eighth day of creation PB - Cold Spring Harbor Laboratory Press CY - Plainview, NY ID - Judson1996 ER - TY - CHAP AU - Mayr, E. ED - Mayr, E. ED - Provine, W. B. PY - 1980 DA - 1980// TI - Some thoughts on the history of the evolutionary synthesis BT - The evolutionary synthesis PB - Harvard Univ. Press CY - Cambridge, MA UR - https://doi.org/10.4159/harvard.9780674865389.c2 DO - 10.4159/harvard.9780674865389.c2 ID - Mayr1980 ER - TY - JOUR AU - Watt, W. B. PY - 2000 DA - 2000// TI - Avoiding paradigm-based limits to knowledge of evolution JO - Evol Biol VL - 32 ID - Watt2000 ER - TY - JOUR AU - Feder, M. E. AU - Mitchell-Olds, T. PY - 2003 DA - 2003// TI - Ecological and evolutionary functional genomics JO - Nature Rev Genet VL - 4 UR - https://doi.org/10.1038/nrg1128 DO - 10.1038/nrg1128 ID - Feder2003 ER - TY - JOUR AU - Laland, K. N. AU - Sterelny, K. AU - Odling-Smee, J. AU - Hoppitt, W. AU - Uller, T. PY - 2011 DA - 2011// TI - Cause and effect in biology revisited: is Mayr’s proximate-ultimate dichotomy still useful? JO - Science VL - 334 UR - https://doi.org/10.1126/science.1210879 DO - 10.1126/science.1210879 ID - Laland2011 ER - TY - CHAP AU - Feder, M. E. AU - Watt, W. B. ED - Berry, R. J. ED - Crawford, T. J. ED - Hewitt, G. M. PY - 1992 DA - 1992// TI - Functional biology of adaptation BT - Genes in ecology PB - Cambridge University Press CY - Cambridge, UK ID - Feder1992 ER - TY - JOUR AU - Storz, J. F. AU - Wheat, C. W. PY - 2010 DA - 2010// TI - Integrating evolutionary and functional approaches to infer adaptation at specific loci JO - Evolution VL - 64 UR - https://doi.org/10.1111/j.1558-5646.2010.01044.x DO - 10.1111/j.1558-5646.2010.01044.x ID - Storz2010 ER - TY - JOUR AU - Barrett, R. D. H. AU - Hoekstra, H. E. PY - 2011 DA - 2011// TI - Molecular spandrels: tests of adaptation at the genetic level JO - Nature Rev Genet VL - 12 UR - https://doi.org/10.1038/nrg3015 DO - 10.1038/nrg3015 ID - Barrett2011 ER -