Evolution and variability of Solanum RanGAP2, a cofactor in the incompatible interaction between the resistance protein GPA2 and the Globodera pallida effector Gp-RBP-1

Carpentier, Jean; Grenier, Eric; Esquibet, Magalie; Hamel, Louis-Philippe; Moffett, Peter; Manzanares-Dauleux, Maria J; Kerlan, Marie-Claire

doi:10.1186/1471-2148-13-87

Table 5 Detailed informations on the Solanum species analyzed in this study

From: Evolution and variability of Solanum RanGAP2, a cofactor in the incompatible interaction between the resistance protein GPA2 and the Globodera pallida effector Gp-RBP-1

							RanGap2 106–237 haplotype
Species (classification reviewed by Jacobs et al., 2008)	Genotype code	Accession	Ploidy level	Country of origin	G. pallida Rce	PVX Rce	PF	PL	SF	SL
S. tuberosum spp. andigena	ADG1	88S.233. 8	4×	Peru	---	+++		x		x
	ADG2	88S.249. 1	4×	Bolivia	---	+++				x
	ADG3	88S.250. 1	4×	Argentina	---	+++	x	x		x
	ADG4	88S.262. 7	4×	Peru	---	---		x		x
	ADG5	88S.408. 14	4×	-	--- (**)	+++		x		x
	ADG6	88S.257. 4	4×	Peru	---	---				x
	ADG7	88S.259. 9	4×	Peru	---	---	x			x
	ADG8	88S.260. 11	4×	Peru	---	---		x		x
	ADG9	88S.261. 3	4×	Peru	---	+++				x
	ADG10	88S.263. 4	4×	Peru	---	+++				x
	ADG11	88S.264. 7	4×	Peru	---	---				x
	ADG12	88S.255. 2	4×	Mexico	---	---				x
S.berthautii	BER1	88S.282.8	2×	Bolivia	---	---				x
	BER2	88S.452.8	2×	-	---	+++				x
S. bulbocastanum	BLB1	00S. 32. 11	2×	Mexico	---	---				x
S. brachistotrichum (S. stenophyllidium)	BST1	00S. 17. 5	2×	Mexico	---	---				x
	BST2	00S. 19. 1	2×	Mexico	---	---				x
S. chacoense	CHC1	88S.456.8	2×	Argentina	--- (*)	---				x
	CHC2	74S. 33. 3	2×	?	?	?				x
S. cardioophyllum	CPH1	00S. 42. 3	2×	Mexico	---	---				x
	CPH2	00S. 43. 21	2×	Mexico	---	---				x
S. fendleri (S. stoloniferum)	FEN1	00S. 56. 1	4×	USA	---	---				x
S. gourlayi	GRL1	88S.315.18	4×	Argentina	---	+++	x		x	x
	GRL2	88S.495.5	4×	Bolivia	+++	+++				x
S. kurtzianum	KTZ1	88S.499. 10	2×	Argentina	+++ (*)	---				x
S. phureja	PHU1	88S.214.14	2×	Colombia	---	---				x
	PHU2	78S.222. 8	2×	Peru	---	+++				x
S. polytrichon (S. stoloniferum)	PLT1	00S. 69. 8	4×	MEXICO	---	---				x
S. spegazzinii	SPG1	78S.236. 2	2×	Argentina	+++	---	x
	SPG2	88S.332.2	2×	Argentina	+++	---	x
	SPG3	88S.334.19	2×	Argentina	+++	---	x
	SPG4	88S.510.9	2×	Argentina	+++	---	x		x
	SPG5	88S.511.7	2×	Argentina	+++	---	x		x
	SPG6	88S.514.3	2×	Argentina	+++	---	x
	SPG7	88S.524.24	2×	Argentina	+++	---	x			x
S. sparsipilum	SPL1	88S.329.18	2×	Bolivia	+++	---				x
	SPL2	99S. 74. 9	2×	Peru	---	---				x
S. stenotomum	STN1	74S. 14. 1	2×	Peru	---	---	x			x
	STN2	74S. 16. 3	2×	Bolivia	---	---				x
S. stoloniferum	STO1	69S.107. 15	4×	?	?	?				x
	STO2	00S. 83. 13	4×	Mexico	---	---				x
S. tarijense	TAR1	90S. 6. 4	2×	Argentina	---	---				x
	TAR2	90S. 14. 31	2×	Argentina	---	---				x
S. trifidum	TRF1	00S. 99. 3	2×	Mexico	---	---				x
	TRF2	00S.100. 20	2×	Mexico	---	---				x
S. tuberosum ssp. tuberosum	TUB1	Desiree	4×	Europe	---	---				x
	TUB2	Darwina	4×	Europe	+++ (**)	+++				x
	TUB3	Multa	4×	Europe	?	++				x
	TUB4	Glenna	4×	Europe	++ (**)	+++				x
S. vernei	VRN1	74S. 32. 1	2×	?	+++	?		x	x
	VRN2	78S.248. 1	2×	Argentina	+++	---	x			x
	VRN3	88S.342.5	2×	Argentina	+++	---				x
	VRN4	88S.530.14	2×	Argentina	+++	---	x	x
	VRN5	AM 78 3778	4×	?	+++	?				x
	VRN6	SCRI 12380	4×	?	+++	?	x			x

The species and country of origin of the 55 accessions used in this study are detailed in the table. The genotype code used in this study is indicated with the corresponding accession number of the considered genotype. G. pallida and PVX resistance (Rce) information is also included for each genotype. Resistance to G. pallida may have been evaluated only for pathotype 3 (*) or pathotype 2 (**). These informations were obtained from either the Sturgeon Bay collection, Braunschweig Institute or INRA. The amino acid at position 106 and 237 for each RanGAP2 sequences obtained are also indicated in the table.

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