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Table 3 Analysis of RanGAP2 for positively selected sites

From: Evolution and variability of Solanum RanGAP2, a cofactor in the incompatible interaction between the resistance protein GPA2 and the Globodera pallida effector Gp-RBP-1

  

Used methods for detecting sites of interest

Animo acid position

Domain in the RanGAP2 gene

M2

M8

FEL

SLAC

33

WPP

0.999**

1.000**

Not identified

Not identified

106

WPP

0.999**

1.000**

0.992*

0.972*

165

LRR

0.957*

0.991**

0.937

0.938

237

LRR

0.999**

1.000**

0.991*

0.901

238

LRR

0.961*

0.988*

Not identified

Not identified

377

LRR

0.976*

0.995**

Not identified

Not identified

447

LRR

0.985*

0.995**

0.927

 

519

 

0.999**

1.000**

Not identified

Not identified

  1. Using a dataset comprising both intra- and inter-specific sequences, probabilities of eight sites of RanGAP2 being under positive selection according to the M2 and M8 models of the CODEML program of PAML (Phylogenetic Analyses by Maximum Likelihood) and the FEL (Fixed Effects Likelihood) and SLAC methods (Single Likelihood Ancestor Counting), both available through the DataMonkey web interface.