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Table 1 Statistical counts of coding genes, splitting (number of exons minus one) and total CDS length (b.p.)

From: Modeling the evolution dynamics of exon-intron structure with a general random fragmentation process

 

Number of coding genes

Total CDS length (107)

Number of splitting (m,105)

Estimated splitting (me, 105)

m m e m e

H. sapiens

17275

2.443

1.827

1.901

- 3.9%

M. musculus

16319

2.276

1.705

1.768

- 2.7%

R. norvegicus

17354

2.193

1.722

1.703

1.0%

D. rerio

15068

1.932

1.462

1.501

- 2.7%

G. gallus

5416

0.655

0.537

0.509

5.4%

P. troglodytes

12508

1.694

1.295

1.316

- 1.6%

B. taurus

11948

1.413

1.142

1.099

4.0%

S. scrofa

5498

0.524

0.433

0.408

6.1%

C. elegans

17684

1.833

1.024

1.425

- 28.4%

D. melangaster

8063

1.141

0.383

0.886

- 57.1%

A. thaliana

16547

1.501

1.083

1.167

- 7.2%

O. sativa

23566

2.255

1.329

1.749

- 24.0%

S. bicolor

17769

1.445

1.041

1.123

- 7.3%

Z. mays

15887

1.320

0.987

1.025

- 3.7%

  1. Annotation data for each species is extracted from Ensembl database. Protein coding genes are counted only if they contain at least one internal translated exon. Total CDS length is the summation of all internal translated exon length in these genes. Number of splitting is estimated by the number of internal translated exons minus one. Estimated splitting is determined from GRFP simulation.