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Table 2 CRISPR arrays from Yersinia pestis genomes

From: Probabilistic models for CRISPR spacer content evolution

Strain

Accession

Yp1

Yp2

Yp3

91001

GenBank:NC_005810.1

21-1-0

3-2-1-0

0

a1122

GenBank:NC_017168.1

7-6-2-5-1-4-3-0

4-3-2-1-0

2-1-0

angola

GenBank:NC_010159.1

8-1-4-0

  

antiqua

GenBank:NC_008150.1

10-9-1-4-3-0

5-2-0

2-1-0

ca88-4125

GenBank:ABCD00000000.1

7-6-2-5-1-4-3-0

4-3-2-1-0

2-1-0

co92

GenBank:NC_003143.1

7-6-2-5-1-4-3-0

4-3-2-1-0

2-1-0

d106004

GenBank:NC_017154.1

6-2-5-1-4-3-0

3-2-1-0

2-1-0

d182038

GenBank:NC_017160.1

11-6-2-5-4-3-0

3-2-1-0

2-1-0

e1979001

GenBank:AAYV00000000.1

11-6-2-5-4-3-0

3-2-1-0

2-1-0

f1991016

GenBank:ABAT00000000.1

7-6-2-5-1-4-3-0

4-3-2-1-0

2-1-0

harbin35

GenBank:NC_017265.1

4- 31- 01

3-2-1-0

2-1-0

india195

GenBank:ACNR00000000.1

7-6-2-5

4-3-2-1-0

2-1-0

kim10

GenBank:NC_004088.1

4-3-0

31-2-1-0

2-1-0

mg05-1020

GenBank:AAYS00000000.1

7-6-2-5-1-4-3-0

4-3-2-1-0

2-1-0

nepal516

GenBank:NC_008149.1

02

3-2-1-0

2-1-0

pestoidesa

GenBank:ACNT00000000.1

2-1- 03

6-3-2-0

1- 01

pestoidesf

GenBank:NC_009381.1

12-5-1-4-3-0

9-8-6-1-7-0

4-3-2-1-0

pexu2

GenBank:ACNS00000000.1

7-6-2-5-1-4-3-0

4-3-2-1-0

2-1-0

z176003

GenBank:NC_014029.1

6-2-5-1-4-3-0

3-2-1-0

2-1-0

  1. Spacers are grouped and assigned a unique number for each array if they show >90% sequence similarity. Different variants are marked by superscript and ignored in the analysis. The leader-proximal end is displayed on the left. Spacer sequences can be found in Additional file 2 for Yp1, in Additional file 3 for Yp2 and in Additional file 4 for Yp3.