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Table 1 Summary diversity statistics, tests of neutrality and indexes of populations growth for all subspecies of P. sundbergi and P. astriata

From: Phylogeography and diversification history of the day-gecko genus Phelsuma in the Seychelles islands

Subspecies

Locus

Lenght

N

Polymorphism

Neutrality

Population growth

H

S

Hd

Ï€

θw

D

FS

R2

P. sundbergi longinsulae

Cytb

761

93

28

30

0.875

0.00362

0.00772

−1.62892*

−17.813*

0.0445*

 

MC1R

617

56

13

10

0.758

0.00261

0.00358

−0.76192

−5.943*

0.0759

 

RELNint61

877

52

19

21

0.903

0.00401

0.00587

−1.02213

−6.903*

0.0798

 

Rag-2

796

136

17

15

0.554

0.00089

0.00345

−1.97263*

−1.97263*

0.0261*

 

PDC

360

56

7

6

0.710

0.00255

0.00363

−0.74314

−2.145

0.0772

P. sundbergi sundbergi

Cytb

761

17

6

12

0.588

0.00234

0.00466

−1.87150*

−0.889

0.0983 *

 

MC1R

617

22

9

7

0.853

0.00391

0.00312

0.81826

−2.265

0.1645

 

RELNint61

877

22

12

19

0.835

0.00364

0.00596

−1.44378

−4.329*

0.0839

 

Rag-2

796

34

6

5

0.371

0.00051

0.00154

−1.76914*

−4.537*

0.0611

 

PDC

360

22

7

6

0.762

0.00422

0.00457

−0.23808

−1.875

0.1186

P. sundbergi ladiguensis

Cytb

761

7

5

6

0.857

0.00300

0.00322

−0.33869

−1.262

0.1543

 

MC1R

617

10

5

4

0.844

0.00223

0.00229

−0.09820

−1.468

0.1652

 

RELNint61

877

10

6

8

0.758

0.00211

0.00303

−1.20688

−1.540

0.1351

 

Rag-2

796

14

2

1

0.143

0.00018

0.00040

−1.15524

−0.595

0.2575

 

PDC

360

14

7

6

0.890

0.00394

0.00524

−0.89259

−3.209*

0.1071*

P. astriata astriata

Cyt b

761

20

10

18

0.895

0.00541

0.00667

−0.71027

−1.539

0.1044

 

MC1R

617

30

8

8

0.660

0.00279

0.00327

−0.44757

−1.813

0.1059

 

RELNint61

877

30

11

10

0.867

0.00356

0.00289

0,.3543

−2.134

0.1555

 

Rag-2

796

40

3

2

0.188

0.00024

0.00059

−1.11593

−1.548

0.0858

 

PDC

360

30

3

2

0.439

0.00132

0.00140

−0.12690

−0.044

0.1184

P. astriata semicarinata

Cyt b

761

46

19

20

0.865

0.00289

0.00598

−1.67207*

−12.687**

0.0499*

 

MC1R

617

64

6

4

0.445

0.00084

0.00137

−0.82812

−2.856*

0.0651

 

RELNint61

877

56

10

11

0.728

0.00307

0.00277

0.30059

−0.596

0.1193

 

Rag-2

796

92

4

3

0.184

0.00024

0.00074

−1.23597

−2.748

0.0445

 

PDC

360

58

3

2

0.101

0.00028

0.00120

−1.31498*

−2.516*

0.0673

  1. a N, number of individuals (mtDNA)/chromossomes (nucDNA). Polymorphism indexes: H, number of haplotypes detected; S, number of segregating sites; Hd, haplotype diversity; π, nucleotide diversity; θw, population mutation parameter [62]. Neutrality test: D, Tajima’s D. Population growth tests: FS, Fu’s FS; R2, Ramos-Onsins and Rozas’ R2.* p < 0.05; ** p < 0.01.
  2. b Statistics were not computed for P. astriata population from Fregate as only three individuals were sampled. Populations from outer islands and hypothetically introduced individuals (3, see above) were also excluded of calculations.