Figure 11

Average true-positive (left-hand panel) and false-positive (right-hand panel) rates provided by the weighted consensus network reconstruction method depending on the number of taxa in the simulated data and the tree inference method used. The presented rates are the averages computed for different sliding window sizes (varying from 10 to 50% of the total MSA length) and different numbers of recombination events (ranging from 1 to 8); 100 datasets were tested for each parameter combination; ML, NJ, MP and BT abbreviations stand for the PhyML, BIOINJ, DNAPARS and MrBayes methods, respectively.