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Table 4 Tree scores

From: Amblyomma cajennense (Fabricius, 1787) (Acari: Ixodidae), the Cayenne tick: phylogeography and evidence for allopatric speciation

MP trees

Alignment

PI

MP number of

MP tree

CI

RI

RC

Gap

MB

ML -lnL

MB -lnL

 

length

 

saved trees/

length

   

treatment

generations

score

score

   

of islands

        

12SrDNA

354

96

216/1

114

0.77

0.94

0.72

5th

1,500,000

1337.06

1366.07

COII

561

170

42

378

0.69

0.89

0.61

Missing

1,000,000

2460.08

2460.1

D-loop

394

85

233/1

210

0.72

0.916

0.66

5th

1,000,000

1512.72

1515.07

ITS2

825

129

10

230

0.9

0.95

0.86

5th

1,000,000

2206.71

2206.71

mtDNA

1310

352

3

730

0.71

0.92

0.66

Missing

1,000,000

5184.39

5184.39

n+mtDNA

2137

464

3

925

0.75

0.91

0.68

Missing

1,000,000

7174.75

7714.74

  1. Trees scores obtained by maximum parsimony (MP), maximum likelihood (ML), and Bayesian (MB) analyses for each of the datasets; PI= parsimony informative characters, CI = consistency index, RI = retention index, RC = rescaled consistency index. 12SrDNA = small mitochondrial ribosmal subunit, COII = cytochrome oxidase c subunit II, DL = control region or d-loop, ITS2 = intergenic spacer 2, mtDNA = concatenated mitochondrial genes, n + mtDNA = concatenated nuclear and mitochondrial genes.