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Table 2 Neighboring gene families analyzed for conserved synteny

From: The vertebrate ancestral repertoire of visual opsins, transducin alpha subunits and oxytocin/vasopressin receptors was established by duplication of their shared genomic region in the two rounds of early vertebrate genome duplications

Symbol

Description

Root1

ATP2B

ATPase, Ca++ transporting, plama membrane

 

B4GALNT

Beta-1,4-N-acetyl-galactosaminyl transferase

Midpoint

CACNA2D

Calcium channel, voltage-dependent, alpha 2/delta subunit

 

CAMK1

Calcium/calmodulin dependent protein kinase

 

CDK

Cyclin-dependent kinase, members 16, 17 and 18

C. elegans

CELSR

Cadherin, EGF LAG seven-pass G-type receptor (flamingo homolog, Drosophila)

 

CNTN

Contactin precursor

 

COPG

Coatomer protein complex, subunit gamma

 

ERC

ELKS/RAB6-interacting/CAST family

 

FLN

Filamin

 

GXYLT

Glucoside xylosyltransferase

 

IKBKE

Kinase epsilon and TANK-binding kinase

 

IQSEC

IQ motif and Sec7 domain containing

 

KDM

Lysine specific demethylase 5

 

KLHDC

Kelch domain containing 8

C. intestinalis

L1CAM

L1 cell adhesion molecule

 

LRRN

Leucine rich repeat neuronal

C. intestinalis

MAGI

Membrane associated guanylate kinase, WW and PDZ domain containing

 

PHTF

Putative homeodomain transcription factor

C. savignyi

PLG

Plasminogen ortholog

C. intestinalis

PLXNA

Plexin A

 

PPM1

Protein phosphatase, Mg2+/Mn2+ dependent

 

PRICKLE

Prickle homolog

 

PTPN

Protein tyrosine phosphatase, non-receptor type

 

RBM

RNA binding motif protein

 

RSBN

Round spermatid basic protein

 

SEMA3

Sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin)

Midpoint

SRGAP

SLIT-ROBO Rho GTPase activating protein

C.intestinalis

SYP

Synaptophysin

C.elegans

TIMM17

Translocase of inner mitochondrial membrane 17

C.elegans

TWF

Twinfilin

 

UBA

Ubiquitin-like modifier activating enzyme, members 1 and 7

 

USP

Ubiquitin specific peptidase, members 4, 11, 15 and 19

Midpoint

WNK

WNK lysine deficient protein kinase

 
  1. 1 If other than Drosophila melanogaster.