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Table 2 Supermatrix details

From: A phylogenetic framework for evolutionary study of the nightshades (Solanaceae): a dated 1000-tip tree

Region

Genome

Genera

Species

Aligned length1

Variable characters

%

PI characters

%

PI of combined matrix (%)

Missing data (%)

Taxon coverage density

ITS

Nuclear ribosomal

51

765

585

461

78.8

345

59.0

10.6

28.8

0.71

matK

Plastid

44

287

1027

419

40.8

262

25.5

8.1

73.3

0.27

ndhF

Plastid

90

472

2109

960

45.5

670

31.8

20.6

56.1

0.44

psbA-trnH

Plastid

30

223

698

340

48.7

227

32.5

7.0

79.3

0.21

trnS-G

Plastid

15

246

1329

694

52.2

439

33.0

13.5

77.1

0.23

trnL-F

Plastid

90

707

905

353

39.0

206

22.8

6.3

34.2

0.66

waxy

Nuclear

41

708

2085

1349

64.7

1104

52.9

33.9

34.1

0.66

Total

 

90

1075

8738

4576

52.4

3253

37.2

100

54.7

0.45

  1. List of the seven regions used for building the Solanaceae mega-phylogeny, showing level of sampling at specific and generic levels, aligned length, and proportions of parsimony informative (PI) and variable sites per region. Values have been calculated without outgroups.
  2. 1ingroup only, excluded regions omitted.