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Table 2 Supermatrix details

From: A phylogenetic framework for evolutionary study of the nightshades (Solanaceae): a dated 1000-tip tree

Region Genome Genera Species Aligned length1 Variable characters % PI characters % PI of combined matrix (%) Missing data (%) Taxon coverage density
ITS Nuclear ribosomal 51 765 585 461 78.8 345 59.0 10.6 28.8 0.71
matK Plastid 44 287 1027 419 40.8 262 25.5 8.1 73.3 0.27
ndhF Plastid 90 472 2109 960 45.5 670 31.8 20.6 56.1 0.44
psbA-trnH Plastid 30 223 698 340 48.7 227 32.5 7.0 79.3 0.21
trnS-G Plastid 15 246 1329 694 52.2 439 33.0 13.5 77.1 0.23
trnL-F Plastid 90 707 905 353 39.0 206 22.8 6.3 34.2 0.66
waxy Nuclear 41 708 2085 1349 64.7 1104 52.9 33.9 34.1 0.66
Total   90 1075 8738 4576 52.4 3253 37.2 100 54.7 0.45
  1. List of the seven regions used for building the Solanaceae mega-phylogeny, showing level of sampling at specific and generic levels, aligned length, and proportions of parsimony informative (PI) and variable sites per region. Values have been calculated without outgroups.
  2. 1ingroup only, excluded regions omitted.