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Table 2 Proportions of variable and parsimony informative characters, best nucleotide substitution model and parameters selected by jModelTest for each data partition

From: Phylogeny and biogeography of a shallow water fish clade (Teleostei: Blenniiformes)

Gene Codon position Length (bp) G+C (%) Variable characters Parsimony informative characters Best model by jModelTest I G
COI 1st+2nd 380 55.2/43.2 74 (19.47%) 51 (13.42%) TIM3+I+G 0.7510 0.4720
  3rd 190 39.2 190 (100%) 189 (99.47%) GTR+G - 0.3310
TMO-4C4 1st+2nd 280 59.0/32.4 114 (40.71%) 79 (28.21%) TIM3+I+G 0.4190 0.4040
  3rd 140 63.3 137 (97.86%) 135 (96.32%) TVM+I+G 0.0210 1.2690
Rhod 1st+2nd 492 51.1/42.4 66 (13.41%) 55 (11.18%) TIM3+I+G 0.8340 0.6190
  3rd 245 76.9 176 (71.84%) 154 (62.86%) TVM+I+G 0.2050 0.6940
Rag1 1st+2nd 1004 56.2/41.2 307 (30.58%) 223 (22.21%) GTR+I+G 0.5550 0.3760
  3rd 502 66.9 455 (90.64%) 432 (86.06%) TPM2uf+I+G 0.0810 0.9380
H3 1st+2nd 218 61.9/47.7 21 (9.63%) 9 (4.13%) GTR+I+G 0.7270 0.1840
  3rd 110 84.0 76 (69.09%) 65 (59.09%) TIM2+I+G 0.2570 0.7580
  1. I: proportion of invariant sites. G: gamma rate variation among sites.